Pinned Repositories
ALPPACA
A tooL for Prokaryotic Phylogeny And Clustering Analysis
Bifrost
BioinfTraining
Repository for bioinformatics training at the Norwegian Veterinary Institute
Ellipsis
Plasmid assembly, gene identification and annotation pipeline
laksetap
App for reporting salmon and rainbow trout losses in Norway
listeriacalculator
Listeria Calculator for raw fish
nvi-documentation
Tutorial page for NVI
NVIpretty
Making R-output pretty in accord with NVI design
Salmonid_MHC_classifier
IPD-MHC classifier for Salmonids
shinylims
A Python Shiny app for LIMS reporting
Norwegian Veterinary Institute's Repositories
NorwegianVeterinaryInstitute/Bifrost
NorwegianVeterinaryInstitute/APEC-2021-Rprepackage
Prepackage for APEC-2021 analyses
NorwegianVeterinaryInstitute/Assemblage
NorwegianVeterinaryInstitute/DemultiplexRawSequenceData
A workflow automation script: demultiplex the library sequence, run quality checks, deliver to archiving and processing afterwards
NorwegianVeterinaryInstitute/DPI
Differences between Pairs of Isolates
NorwegianVeterinaryInstitute/nvi-documentation
Tutorial page for NVI
NorwegianVeterinaryInstitute/NVIpackager
Tools to facilitate development of NVIverse packages
NorwegianVeterinaryInstitute/listeriacalculator
Listeria Calculator for raw fish
NorwegianVeterinaryInstitute/NVIpretty
Making R-output pretty in accord with NVI design
NorwegianVeterinaryInstitute/shinylims
A Python Shiny app for LIMS reporting
NorwegianVeterinaryInstitute/VRE_paper
NorwegianVeterinaryInstitute/.github
NorwegianVeterinaryInstitute/2024-10-24-nvi
Webpage for the Git workshop at NVI
NorwegianVeterinaryInstitute/cake-planning
Cake Planning at VI
NorwegianVeterinaryInstitute/diplotopia
Nextflow pipeline for analysis of diploid samples
NorwegianVeterinaryInstitute/hafnia_reports_2024
NorwegianVeterinaryInstitute/INIKA
Repository for INIKA project - Code development and sharing
NorwegianVeterinaryInstitute/irida-plugin-nvi-MLST
NorwegianVeterinaryInstitute/licecalc
A {golem} version with {shiny.i18n} support of the lice calculator app
NorwegianVeterinaryInstitute/Nepal
NExtflow Pipeline for AmpLicons
NorwegianVeterinaryInstitute/noRmvet
NorwegianVeterinaryInstitute/NVIbatch
Tools to facilitate the running R-scripts in batchmode at NVI
NorwegianVeterinaryInstitute/NVIcheckmate
Extension of the R-package checkmate for argument checking adapted to NVIverse
NorwegianVeterinaryInstitute/NVIdb
R-package to facilitate the use of the Norwegian Veterinary Institute's databases.
NorwegianVeterinaryInstitute/NVIpjsr
Tools for working with PJSdata
NorwegianVeterinaryInstitute/OKcheck
Tools to facilitate checking of the data from national surveillance programmes
NorwegianVeterinaryInstitute/OKplan
Tools facilitating the planning of surveillance programmes for the NFSA
NorwegianVeterinaryInstitute/Saprolegnia_NVI
Saprolegnia current research at NVI
NorwegianVeterinaryInstitute/VIGASP_pipeline_overview
NorwegianVeterinaryInstitute/WTE_AI_article
White Tailed Eagle Article - place to put the cleaned scripts, functions - and supplementary material for the article