protein-function-prediction

There are 41 repositories under protein-function-prediction topic.

  • kexinhuang12345/DeepPurpose

    A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

    Language:Jupyter Notebook1.1k30132291

  • zjunlp/OntoProtein

    [ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

    Language:Python14973521

  • westlake-repl/SaprotHub

    Making Protein Modeling Accessible to All Biologists

    Language:Jupyter Notebook10641212

  • J-SNACKKB/FLIP

    A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design

    Language:Jupyter Notebook10571116

  • samsinai/VAE_protein_function

    Protein function prediction using a variational autoencoder

    Language:Jupyter Notebook957223

  • PedroMTQ/mantis

    A package to annotate protein sequences

    Language:Python563516

  • bioinf-mcb/Metagenomic-DeepFRI

    Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.

    Language:Python405466

  • yourh/DeepGraphGO

    DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction

    Language:Python3512111

  • idrblab/AnnoPRO

    Feature map and function annotation of Proteins

    Language:Python330127

  • jiaqingxie/DeepProtein

    Deep Learning Library and Benchmark for Protein Sequence Learning (Bioinformatics 2025)

    Language:Jupyter Notebook31433

  • XinshaoAmosWang/DeepCriticalLearning

    Deep Critical Learning. Implementation of ProSelfLC, IMAE, DM, etc.

    Language:Python31204

  • psipred/FFPredGAN

    Improving protein function prediction with synthetic feature samples created by generative adversarial networks

    Language:Python22225

  • microsoft/protein-uq

    Benchmarking uncertainty quantification methods on proteins.

    Language:Jupyter Notebook21904

  • amirmohan/epistatic-net

    Epistatic Net is an algorithm which allows for spectral regularization of deep neural networks to predict biological fitness functions (e.g., protein functions).

    Language:Jupyter Notebook18202

  • HUBioDataLab/ProtHGT

    A Heterogeneous Graph Transformer (HGT)-based model for protein function prediction using biological knowledge graphs and protein language models

    Language:Python13200

  • kiharalab/Domain-PFP

    Domain-PFP is a self-supervised method to predict protein functions from the domains

    Language:Jupyter Notebook11241

  • idrblab/PFmulDL

    Multi-label protein function annotation

    Language:Python7003

  • primaryodors/primarydock

    PrimaryOdors.org molecular docker.

    Language:C++721954

  • usadellab/prot-scriber

    Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

    Language:Rust74275

  • branchialspace/foldbender

    protein graph representation

    Language:Python6101

  • psipred/STRING2GO

    Protein function prediction based on protein-protein interaction network topology and deep maxout neural networks

    Language:Python6323

  • aalto-ics-kepaco/GO-LTR-prediction

    Protein function prediction through latent tensor reconstruction

    Language:Python5101

  • GauravPandeyLab/ensemble_integration

    Integrating multimodal data through heterogeneous ensembles

    Language:Python5005

  • anazhmetdin/protEncoder

    python package to encode protein using different methods for machine learning

    Language:Python4103

  • BorgwardtLab/DeepEST

    Language:Python4201

  • Vikasdubey0551/Sequential-analysis-ANN

    Classification of protein function based on their sequences with Artificial Neural Networks

    Language:Jupyter Notebook4103

  • bio-ontology-research-group/PU-GO

    Predicting protein functions using positive-unlabeled ranking with ontology-based priors

    Language:Python31122

  • johnnytam100/FPredX

    This repository contains the FPredX models for the prediction of excitation maximum, emission maximum, brightness and oligomeric state of fluorescent proteins.

    Language:Python3112

  • darcyabjones/pclust

    A nextflow pipeline to cluster sets of proteins.

    Language:R2301

  • nnilayy/BioCore

    A comprehensive bioinformatics platform/suite for molecular biology research and analysis, integrating tools for protein structure visualization, sequence analysis, and gene ontology exploration.

    Language:Jupyter Notebook2100

  • AIMedLab/BioNEV

    Graph Embedding Evaluation / Code and Datasets for "Graph Embedding on Biomedical Networks: Methods, Applications, and Evaluations"

    Language:Python1000

  • HUBioDataLab/Domain2GO

    A Python tool for predicting protein functions by associating domains with Gene Ontology terms using existing domain and GO annotation data

    Language:Python1100

  • RG-10/RG-10.github.io

    🌱🌟 My Personal Portfolio 🌟🌱

    Language:JavaScript1100

  • suyash-chintawar/OntoPred

    An efficient attention-based approach for Protein Function Prediction using skip-gram features. Proposing two novel approaches, namely, OntoPred and OntoPredPlus capable to annotate protein sequences accurately.

    Language:Jupyter Notebook0101

  • AlfredoBaione/protein-function-classification

    Machine learning techniques to predict the functions of proteins based on their sequences.

    Language:R

  • RG-10/Protein-Functions-Prediction

    🧬Protein Functions Prediction through Amino Acids Sequences🧬

    Language:Jupyter Notebook10