kexinhuang12345/DeepPurpose
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
Jupyter NotebookBSD-3-Clause
Issues
- 0
HTTPError
#176 opened by Pratanukayet - 0
error when using TDC dataset to predict DTI
#175 opened by XWcode11 - 0
- 0
Confusion matrix
#173 opened by tompapgr - 1
running on GPU
#167 opened by SilentReader99 - 0
duplicate issue
#171 opened by cfsmile - 0
validation curve plot
#170 opened by misgana30 - 1
Install ERROR: Could not find a version that satisfies the requirement rdkit (from descriptastorus)
#169 opened by holeung - 0
Dataset - def process_Binding_DB - extra space on "BindingDB Target Chain Sequence"
#168 opened by emanskaia - 0
Query Regarding y_pred values
#166 opened by CallMeDek - 2
BindingDB: Amino acid sequences and y_pred values
#165 opened by jchen634 - 3
The GNN model does not work properly
#159 opened by songyu2022 - 3
Cannot running GNN+Transformer model
#152 opened by yrq3027 - 1
Accuracy of BindingDB pre-trained models
#162 opened by osession - 1
DGL_GCN-Transformer cannot work.
#161 opened by DeepAIDD - 1
Error while downloading BindingDB
#160 opened by parthnatekar - 3
Query Regarding MPNN Drug Encoder
#163 opened by SudhirGhandikota - 1
Question about data format for prediciton
#158 opened by tomh014 - 0
Error Message when Using Custom Data
#157 opened by calaism - 1
- 1
package nbconvert-core-7.2.1-pyhd8ed1ab_0 requires jinja2 >=3.0, but none of the providers can be installed - package nbclient-0.7.0-pyhd8ed1ab_0 requires jupyter_client >=6.1.5, but none of the providers can be installed - nothing provides importlib-metadata >=4.7.0,<4.7.1.0a0 needed by importlib_metadata-4.7.0-hd8ed1ab_0 - package libsqlite-3.39.4-h753d276_0 requires libzlib >=1.2.12,<1.3.0a0, but none of the providers can be installed
#155 opened by 32109012 - 2
Binding scores
#150 opened by Jameel9 - 4
Drug propery prediction format error
#148 opened by Davegdd - 3
Error when using DGL_GCN to run DTI model
#151 opened by yrq3027 - 0
Virtual Screening of extrnal library
#149 opened by Jameel9 - 1
Side effects prediction
#145 opened by greg217 - 1
download_BindingDB() 404 error
#146 opened by Jin0331 - 1
Multi-GPU parallel training leads to model output dimension errors. output==>(Batch_size*N_GPU)
#141 opened by xiaodanyin - 1
Error when using DGL_GCN
#142 opened by hyojin0912 - 1
BindingDB processing improvements
#144 opened by alex-golts - 4
QSAR Examples?
#139 opened by naeemmrz - 3
- 1
- 0
Reliability of the model
#137 opened by viko-3 - 0
about pretrain model for BindingDB
#136 opened by viko-3 - 3
about virtual screen
#134 opened by viko-3 - 1
About Pretrain_model
#132 opened by viko-3 - 3
Could not resolve host: github.com
#131 opened by imraaqeel - 3
- 5
- 2
n-grams encoder for amino acid sequence
#127 opened by pykao - 8
- 1
About encoding proteins for DTI
#130 opened by kch38896 - 1
Calculating number of parameters in model
#128 opened by hyojin0912 - 1
drug and target names
#124 opened by sailseem - 11
how to apply model
#122 opened by sailseem - 4
Protein Function Prediction ValueError
#119 opened by ayushpanda2002 - 3
- 1
- 6
Google Colab?
#121 opened by rjd55