proteome
There are 18 repositories under proteome topic.
ropensci/biomartr
Genomic Data Retrieval with R
smith-chem-wisc/MetaMorpheus
Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities
drostlab/orthologr
Genome wide orthology inference and dNdS estimation
tubanlee/MD
Matrix dissimilarity from the differences of Moments and sparsity
symbioticMe/proBatch
Tools for Batch Effects Diagnostics and Correction
smith-chem-wisc/ProteoformSuite
Construction, quantification, and visualization of proteoform families
ChongLC/MinimalSetofViralPeptidome-UNIQmin
An alignment-independent tool for the study of pathogen sequence diversity
ifremer-bioinformatics/orson
Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.
PalMuc/triangulation
Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.
ChongLC/UNIQmin_PublicationData
This repository is to store the used dataset for publications related to UNIQmin
louis-pare/TPBA
Blast wrapper using snakemake to generate correspondance between a list of transcript or protein and some proteomes.
lucasragr/Phosphosite_localization
It assigns the phosphorylation site in protein
Pathmanaban/Biological-data
Sharing some useful biological data that I generated during my PhD.
Pathmanaban/Phospho_analysis
Scripts used for the phosho data analysis
tyronechen/SARS-CoV-2
This is now the main repository. A few older issues are still tracked on gitlab for reference.
workflow-development-interest-group/fragpipe-proteomics-pipeline-tutorial
CWL descriptions for FragPipe Proteomics Pipline