smith-chem-wisc/MetaMorpheus

Issues

• Issue with Peptide Assignment and Protein Grouping in Software v.1.0.2

  #2410 opened 2 months ago by AmirWIS
  3

• MetaDraw crashed while attempting to open the Chimeric Scan View.

  #2418 opened 2 months ago by mzhastings
  2

• What does amino acid and amino acid2 mean in the custom crosslinker box?

  #2411 opened 2 months ago by bluemooninvestor
  2

• XLMS search run failed: HELP

  #2412 opened 2 months ago by bluemooninvestor
  2

• Can't enter any value in the crosslinker total mass box

  #2414 opened 2 months ago by bluemooninvestor
  0

• What does a PEP and PEP Q-value of NaN indicate?

  #2415 opened 2 months ago by bluemooninvestor
  1

• Peptide Quant Output

  #2406 opened 3 months ago by CEBoos
  0

• Multiprotease search and target/decoy collisions

  #2405 opened 3 months ago by Alexander-Sol
  0

• crash running a non-specific search.

  #2400 opened 3 months ago by Dmorgen
  3

• Custom Glycan Library and Enzyme Cleavage Sites for O-Glycopeptide Searches in O-Pair

  #2388 opened 4 months ago by MuZi-Y
  3

• In PTM search assigned unimod id dosen't match real unimod id

  #2288 opened a year ago by Nate4499
  1

• Glyco Results.txt does not have a summary at the top :(

  #2368 opened 6 months ago by nbollis
  0

• Crash - Index was outside the bounds of the array - XLSearchTask

  #2366 opened 6 months ago by xLinkKnight
  0

• add q-value to the all quantified peptides output.

  #2362 opened 7 months ago by trishorts
  0

• FDR control

  #2357 opened 8 months ago by ShadoWyyyy
  1

• Add q-value output filter for XL Search

  #2358 opened 7 months ago by trishorts
  0

• No Effect from Including spectrumLibrary.msp

  #2332 opened 10 months ago by yuz2011
  1

• Specify contaminants database via command line

  #2335 opened 10 months ago by mgraeff
  0

• Custom mod on custom amino acid

  #2333 opened 10 months ago by lonelu
  1

• Index was outside the bounds of the array

  #2331 opened 10 months ago by animesh
  0

• Metadraw crashes with PSMs that contains the fixed modification "Arginine amide on R, prot C-termini" Uniprot

  #2330 opened a year ago by studentDenmark
  0

• separation type menu not populated in calibration task window

  #2328 opened a year ago by trishorts
  0

• MetaDraw doesn't load Looplinks or Deadends from crosslink search

  #2323 opened a year ago by trishorts
  0

• Crosslink user controlled protein N-terminal as a modification site

  #2312 opened a year ago by lonelu
  1

• glyco spectrum library stuff

  #2306 opened a year ago by trishorts
  0

• MetaMorpheus GUI fluctuating between running and not responding

  #2301 opened a year ago by mcorder
  0

• Update Spectral Library Bug

  #2291 opened a year ago by nbollis
  0

• XL toml causes crash

  #2289 opened a year ago by Alexander-Sol
  0

• Getting an "Arithmetic operation resulted in an overflow" error when calibrating the data

  #2287 opened a year ago by MKatWIS
  0

• Array.BinarySearch Audit

  #2284 opened a year ago by avcarr2
  2

• Spectra file connections aren't closed when the file is deleted from the Spectra tab

  #2270 opened 2 years ago by Alexander-Sol
  1

• XL-MS output ought to include two scan number columns to support MS3 identification?

  #2283 opened a year ago by hbarsnes
  0

• Spectral library generation writes dubious spectra

  #2279 opened 2 years ago by Alexander-Sol
  0

• "Enhanced MBR" under LFQ isn't saved to .toml

  #2255 opened 2 years ago by Alexander-Sol
  2

• quant keeps going back to LFQ

  #2268 opened 2 years ago by jessegmeyerlab
  1

• MetaDraw settings not saving

  #2235 opened 2 years ago by CEBoos
  0

• Download Proteome Error

  #2257 opened 2 years ago by conorjenkins
  3

• Cannot add Decimal Point in Product Mass Tolerance Box

  #2240 opened 2 years ago by conorjenkins
  4

• should we have file specific normalized collision energy NCE

  #2265 opened 2 years ago by trishorts
  0

• Error Reading Experimental Design File when Re-Running a Search

  #2256 opened 2 years ago by conorjenkins
  0

• Version 1.0.1 doesn't install runtimes on upgrade

  #2253 opened 2 years ago by CEBoos
  0

• running on hpc environment

  #2250 opened 2 years ago by rsalz
  7

• Add Bayesian Fold Change Analysis from FlashLFQ

  #2251 opened 2 years ago by trishorts
  0

• Unchecking "Overwrite App Data" during install causes crash on start

  #2246 opened 2 years ago by Alexander-Sol
  0

• Unchecking "Overwrite App Data" during install causes crash on start

  #2244 opened 2 years ago by Alexander-Sol
  0

• Unchecking "Overwrite App Data" during install causes crash on start

  #2245 opened 2 years ago by Alexander-Sol
  0

• Unchecking "Overwrite App Data" during install causes crash on start

  #2243 opened 2 years ago by Alexander-Sol
  0

• Unchecking "Overwrite App Data" during install causes crash on start

  #2247 opened 2 years ago by Alexander-Sol
  0

• we might be counting diagnostic ions in score for TMT and we probably shouldn't be

  #2239 opened 2 years ago by trishorts
  0

• allresults and results.txt files are basically empty for glyco search

  #2233 opened 2 years ago by trishorts
  0