Pinned Repositories
.github
Community health files for the @GitHub organization
aimeos-typo3
TYPO3 e-commerce extension for high performance web shops
bioconda-recipes
Conda recipes for the bioconda channel.
chronologer
Retention time prediction
Compass
Coon OMSSA (Open Mass Spectrometry Search Algorithm) Proteomic Analysis Software Suite.
dbscan
DBSCAN Clustering Algorithm C# Implementation
DBSCAN-1
Implementation of the DBSCAN clustering algorithm
MetaMorpheus
Bottom-up proteomics database search software with integrated posttranslational modification (PTM) discovery capability
mzLib
Library for mass spectrometry projects
ProteoformSuite
Construction, quantification, and visualization of proteoform families
trishorts's Repositories
trishorts/.github
Community health files for the @GitHub organization
trishorts/bioconda-recipes
Conda recipes for the bioconda channel.
trishorts/chronologer
Retention time prediction
trishorts/dbscan
DBSCAN Clustering Algorithm C# Implementation
trishorts/DBSCAN-1
Implementation of the DBSCAN clustering algorithm
trishorts/MetaMorpheus
Bottom-up proteomics database search software with integrated posttranslational modification (PTM) discovery capability
trishorts/mzLib
Library for mass spectrometry projects
trishorts/docs
This repository contains .NET Documentation.
trishorts/falcon
Large-scale tandem mass spectrum clustering using fast nearest neighbor searching.
trishorts/FlashLFQ
Ultra-fast label-free quantification algorithm for mass-spectrometry proteomics
trishorts/FuLeTA
FUll-LEngth Transcriptome Analysis
trishorts/LncRNADiscovery
Snakemake pipeline for lncRNA discovery and quantification
trishorts/Long-Read-Proteogenomics
trishorts/machinelearning
ML.NET is an open source and cross-platform machine learning framework for .NET.
trishorts/metamorpheus-feedstock
A conda-smithy repository for metamorpheus.
trishorts/MetaNetwork
Weighted Gene Co-expression Network Analysis Rshiny Application
trishorts/MetaPAL
A framework for reading and writing ML-ready proteomics data
trishorts/MS1_DataSimulator
trishorts/philosopher
A complete toolkit for shotgun proteomics data analysis
trishorts/ppx
A Python interface to proteomics data repositories
trishorts/ProjectOne
trishorts/prosit
Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7
trishorts/ProteaseGuru
trishorts/RawFileReader
trishorts/rna-seq-kallisto-sleuth
A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.
trishorts/sage
Proteomics search & quantification so fast that it feels like magic
trishorts/sbas
CloudOS Digital Research Environment
trishorts/Spritz
Software for RNA-Seq analysis on Windows, including creating sample-specific proteoform databases from genomic data
trishorts/tdf2mzml
trishorts/UniDec
Universal Deconvolution of Mass and Ion Mobility Spectra