pysam

There are 11 repositories under pysam topic.

PlatonB/ld-tools
ld-tools: toolkit for linkage disequilibrium calculation designed to work locally
Language:Python4 1 70
bch-gnome/hpds_annotation
Annotation pipeline for HPDS
Language:Python3 5 02
etkayapar/bamRefine
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
Language:Python3 1 111
Deivmercer/pileup
Progetto di Elementi di Bioinformatica, A.A. 2021/2022
Language:Jupyter Notebook1 2 00
aobermayer4/NGSDataParsing
Various scripts for working with NGS data in file formats such as VCF, BAM/SAM, and JSON
Language:Python0 1 00
awells-uva/capstone_2022
Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.
Language:Jupyter Notebook0 1 00
CHRUdeLille/pysam_containers
Pysam module (python2.7) singularity container
Language:Shell0 5 00
fpoli/genome-track
Bioinformatics CLI tool to generate WIG tracks from SAM/BAM files
Language:Python0 3 00
tombch/basecount
Per-position and summary statistics for BAM files
Language:Python0 1 00
petermchale/genomics-web-app
vue app with flask REST api to process genomic data
Language:Jupyter Notebook1 0
PrusWielki/Computational-Genomics
Projects realized during Computational Genomics course.
Language:HTML1 0