reactome
There are 23 repositories under reactome topic.
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
decodebiology/geneSCF_inactive
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
moosa-r/rbioapi
rbioapi: User-Friendly R Interface to Biologic Web Services' API
PathwayAnalysisPlatform/PathwayMatcher_Dev
PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/PathwayMatcher
bio2bel/reactome
Integration of pathway-related information from Reactome in BEL
linas/biome-distribution
Research into statistical distributions of genomes, proteomes and reactomes
santo-it/reactome-orientdb
OrientDB graph database version of the Reactome Database
arnaudporet/sbgn2sif
Converting SBGN encoded pathways to the SIF file format
cannin/sbgn2sif
Converting SBGN-encoded pathways to the SIF file format
dhimmel/pathways
A compilation of pathway gene sets
francescopatane96/RNA-seq_Pipeline
Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
RichardMatzko/BioNexusSentinel
A research biochemical network explorer and genetic cytohistological encyclopedia.
wikipathways/reactome2gpml-converter
Converts Reactome pathways to GPML format
aprezvykh/bioinformatics
some scripts to process transcriptomics and Chip-seq data
geneontology/reactome-go-cams
A set of GO-CAMs built automatically from Reactome pathways.
marinoandrea/stargate-x
Python implementation of a bipartite directed multigraph extracted from the Reactome biological pathway database.
pasculorente/diagram-exporter
Exporter of the diagram layout to different formats
pasculorente/diagram-exporter-example
An example on how to use reactome Rest API
pasculorente/fireworks-exporter
Service to generate images of top level pathway view (the fireworks).
Caleydo/pathfinder_graph_reactome
pathfinder http://reactome.org/ graph binding
kkmann/pwcuratr
Curate gene pathway clusters using functional interactions
nursa-reactome/gsea-desktop
This fork is intended solely for generating a GSEA jar file that is compatible with Reactome.
pratiklodha/graphql
Google Summer Of Code 2020.