reactome-pathway

There are 9 repositories under reactome-pathway topic.

  • amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis

    This tutorial is created for educational purpose

    Language:R272214

  • dvklopfenstein/ReactomePy

    Explore biomolecular pathways in Reactome from the command-line or a Python script

    Language:Python21204
  • GeneSCF

    genescf/GeneSCF

    Gene Set Clustering based on Functional annotation

    Language:Perl213195

  • linas/biome-distribution

    Research into statistical distributions of genomes, proteomes and reactomes

    Language:Scheme5300

  • Greco-Lab/FunMappOne

    FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.

    Language:R4343

  • francescopatane96/RNA-seq_Pipeline

    Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...

    Language:Jupyter Notebook2101

  • geneontology/reactome-go-cams

    A set of GO-CAMs built automatically from Reactome pathways.

    1113

  • reactome-pwp/fireworks-layout

    Custom radial layout algorithm to visualise Reactome pathways in a space-filling graph

    Language:Java1323

  • CaseOLAP/covid-cvd

    Understanding the Molecular Interface of Cardiovascular Disease and COVID-19: A Data Science Approach

    Language:Jupyter Notebook0300