riboseq
There are 14 repositories under riboseq topic.
zhpn1024/ribotish
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
schatzlab/scikit-ribo
Accurate estimation and robust modelling of translation dynamics at codon resolution
saketkc/riboraptor
Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
XPRESSyourself/XPRESSpipe
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
sunyumail93/PipeRiboseq
A comprehensive pipeline for Ribo-seq data analysis
smithlabcode/riborex
Riborex: Fast and flexible identification of differential translation from Ribo-seq data
smithlabcode/ribotricer-results
Results and scripts for benchmarking ribotricer for translating ORF detection from Ribo-seq data
fallerlab/Ribo-ODDR
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
vimalkvn/riboplot
RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).
noepozzan/small-peptide-pipeline
Pipeline for small peptide discovery
saketkc/ribo-seq-snakemake
Snakemake pipeline for Ribo-Seq analysis
MPUSP/snakemake-bacterial-riboseq
Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.
ms-gx/CircAidMe
CircAidMe is a tool designed to analyze data generated with CircAID-p-seq (immaginabiotech.com/product/circaid-p-seq/). CircAidMe was designed and implemented by Genexa (genexa.ch) in collaboration with Immagina Biotechnology.
Lukas-Wierdsma/Internship-UCC-2023
Repository for my internship at the University College Cork in 2023.