zhpn1024/ribotish

Issues

• Not working with stringtie custom GTF

  #37 opened 4 months ago by ericmalekos
  5

• Why does ribotish call so many ORFs compared to price and ribocode

  #36 opened 6 months ago by chenwt
  6

• Empty sequence error

  #34 opened 10 months ago by NastiaSkuba
  2

• Encountered error when using ribotish predict

  #35 opened 9 months ago by lbwfff
  2

• TypeError: unsupported operand type(s) for +=: 'NoneType' and 'int'

  #33 opened 10 months ago by haowBio
  7

• ribotish predict module run error

  #32 opened 2 years ago by haowBio
  2

• Use of 5' mismatch reads in predict

  #31 opened 2 years ago by ericmalekos
  1

• TypeError: '>=' not supported between instances of 'NoneType' and 'float'

  #23 opened 2 years ago by ericmalekos
  3

• ribotish quality "no reads found" for TIS reads

  #21 opened 2 years ago by ericmalekos
  10

• No reads found!

  #29 opened 2 years ago by noepozzan
  52

• AttributeError: 'Exp' object has no attribute 'sq'

  #30 opened 2 years ago by noepozzan
  4

• The meaning and differences in TisType

  #27 opened 2 years ago by ruixuan-zhang
  10

• Wrong CDS annotation

  #28 opened 2 years ago by agsanbel
  6

• Feature Request - Add 3' end match for RPFs

  #10 opened 2 years ago by alanlorenzetti
  6

• ValueError: start out of range (-21) running ribotish quality

  #9 opened 2 years ago by rbmk1000
  4

• issues about quality

  #6 opened 2 years ago by Wang497
  6

• Python 3 compatibility

  #5 opened 2 years ago by dpryan79
  1

• Ribotish on prokaryotic ribosome profiling

  #4 opened 2 years ago by dgelsin
  13

• TypeError: '<' not supported between instances of 'NoneType' and 'int' when running predict module

  #26 opened 2 years ago by mt1022
  5

• Error running ribotish predict with multicore parameters

  #3 opened 2 years ago by elabaronne
  2

• Error when running ribotish tisdiff

  #1 opened 2 years ago by marcasriv
  1

• TypeError: unsupported operand type(s) for +=: 'NoneType' and 'int'

  #24 opened 3 years ago by ErinDuffyLacy
  5

• run mistakes

  #25 opened 3 years ago by czppeter
  4

• how to edit the parameter (-d DIS Position range near start codon or stop codon)?

  #14 opened 4 years ago by shwdmsh
  3

• ribotish quality: error: argument -d: expected one argument

  #18 opened 3 years ago by yycunc
  2

• ribotish tisdiff error?ZeroDivisionError: integer division or modulo by zero

  #16 opened 4 years ago by etmorefish
  10

• --altcodons ACG,CUG

  #17 opened 4 years ago by etmorefish
  0

• what the types of TisType mean?

  #15 opened 4 years ago by shwdmsh
  2

• What dose this Horizontal line mean

  #13 opened 4 years ago by shwdmsh
  3

• New release for python 3

  #2 opened 6 years ago by eggzilla
  3

• Feature request: Ribo-seq counts in the results

  #11 opened 4 years ago by nsotta
  2

• "wrong exon strand" and "stop codon error"

  #8 opened 5 years ago by sjannielefevre
  17

• Visualization of single transcripts with a-site/p-site coverage

  #7 opened 5 years ago by AlexFryd
  4