rna-secondary-structure

There are 14 repositories under rna-secondary-structure topic.

  • fjossinet/RNArtist

    With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...

    Language:Kotlin15861810

  • jaswindersingh2/SPOT-RNA

    RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

    Language:Perl9362033
  • R2DT

    r2dt-bio/R2DT

    Visualise RNA secondary structure in consistent, reproducible and recognisable layouts

    Language:PostScript5999111

  • lbcb-sci/RiNALMo

    RiboNucleic Acid (RNA) Language Model

    Language:Python554128

  • fjossinet/RNArtistCore

    A Kotlin DSL to create and plot RNA 2D structures. The drawing engine behind RNArtist to be used from the command line.

    Language:Kotlin26255

  • jaswindersingh2/SPOT-RNA2

    Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

    Language:Perl24278

  • marcom/RNAstructure.jl

    Julia interface to the RNAstructure program suite for RNA structure prediction and analysis

    Language:Julia10331

  • lipan6461188/RNA_Covariation

    A tutorial about RNA covary base pairs calling

    Language:Python5201

  • bioinformatics-torvergata/BRIO

    BRIO: a web server for RNA sequence and structure motif scan (https://doi.org/10.1093/nar/gkab400)

    Language:HTML4310

  • lemerleau/RAFFT

    RAFFT: RNA structure and folding dynamics predictions using the fast Fourier transform

    Language:Python4201

  • marcom/FoldRNA.jl

    Nucleic acid secondary structure prediction and analysis

    Language:Julia4330

  • marcom/PlotRNA.jl

    Plot nucleic acid secondary structures with Julia

    Language:Julia4251

  • bioinformatics-torvergata/RIG

    Supporting data and scripts for "Relative Information Gain: Shannon entropy-based measure of the relative structural conservation in RNA alignments" (https://doi.org/10.1093/nargab/lqab007)

    Language:Python2200

  • MEskerod/StructUnet

    Neural network for RNA secondary structure prediction developed as part of master's thesis in Bioinformatics.

    Language:Jupyter Notebook2100