rrna

nf-core/ampliseq

Amplicon sequencing analysis workflow using DADA2 and QIIME2

pr2database/pr2database

Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

epruesse/SINA

SINA - Reference based multiple sequence alignment

bonsai-team/matam

Mapping-Assisted Targeted-Assembly for Metagenomics

y9c/pseudoU-BIDseq

🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)

ifremer-bioinformatics/samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

carden24/V-Xtractor

Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

fallerlab/Ribo-ODDR

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer

A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

pipecraft2/pipecraft

PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines

YaccConstructor/YC.Bio

Tools for metagenomic assembly processing.

zadyson/OTUStalker

OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR primer set. OTUStalker requires a number of output files generated by QIIME (v1.8.0), and creates new files allowing re-analysis of the data set using QIIME.

felixgrunberger/rRNA_maturation

mjy/psy

Perl libraries for handling rRNA annotated multiple sequence alignments, and more