rrna
There are 15 repositories under rrna topic.
tseemann/barrnap
:microscope: :leo: Bacterial ribosomal RNA predictor
nf-core/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
pr2database/pr2database
Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
epruesse/SINA
SINA - Reference based multiple sequence alignment
bonsai-team/matam
Mapping-Assisted Targeted-Assembly for Metagenomics
y9c/pseudoU-BIDseq
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
carden24/V-Xtractor
Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
fallerlab/Ribo-ODDR
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
nlabrad/CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
pipecraft2/pipecraft
PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines
YaccConstructor/YC.Bio
Tools for metagenomic assembly processing.
zadyson/OTUStalker
OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR primer set. OTUStalker requires a number of output files generated by QIIME (v1.8.0), and creates new files allowing re-analysis of the data set using QIIME.
mjy/psy
Perl libraries for handling rRNA annotated multiple sequence alignments, and more