epruesse/SINA

Issues

• difficulties using SINA with my own MSA

  #110 opened 3 months ago by korneel-emweb
  2

• sina not working within a docker container

  #107 opened 2 years ago by nick-youngblut
  2

• Terminatin with signal 11 error

  #108 opened a year ago by tak-gk
  2

• MSA output of unequal length

  #109 opened 7 months ago by dgslos
  1

• Values calculated in Log are not exportable to CSV (fn_nuc)

  #111 opened 3 months ago by epruesse
  0

• error while loading shared libraries: libtbb.so.2

  #102 opened 3 years ago by rungitta
  6

• libboost library conflict with qiime2

  #106 opened 2 years ago by nick-youngblut
  3

• Failing to load db index

  #101 opened 3 years ago by MPourjam
  4

• Problem building / installing documentation on Debian 10

  #105 opened 3 years ago by a1an77
  0

• Compile issue on Debian 10 (linker command line)

  #104 opened 3 years ago by a1an77
  0

• Support arb 7.0

  #103 opened 3 years ago by a1an77
  0

• build failure ‘tbb_allocator’ is not a member of ‘tbb’

  #98 opened 4 years ago by smoe
  8

• --add-relatives outputs unexpected sequence ID

  #99 opened 3 years ago by glajoie1
  3

• Problems installing sina on macOS Big Sur

  #100 opened 3 years ago by JudithBernett
  1

• How could I calculate identity between two 16S rDNA sequence？

  #95 opened 4 years ago by fujch7
  1

• Custom ARB database has no taxonomy fields

  #97 opened 4 years ago by johanneswerner
  1

• necessary fields for "-f" not stated correctly in documentation, and also not given by "--arb-list-fields"?

  #96 opened 4 years ago by jvollme
  1

• Base shift in copied alignment

  #94 opened 4 years ago by jgerken
  3

• Problems with LCA quorum

  #93 opened 4 years ago by jgerken
  7

• Support FastQ

  #61 opened 5 years ago by epruesse
  0

• Implement banded alignment

  #92 opened 4 years ago by epruesse
  0

• Limit max memory

  #87 opened 4 years ago by epruesse
  1

• Printing Full Phylogeny

  #75 opened 4 years ago by mbcouger
  4

• calling SINA 1.6 from arb_edit4: positional arguments exception

  #84 opened 4 years ago by bph6212ln
  2

• Sina does not actually output LCA classification anymore?

  #91 opened 4 years ago by jvollme
  3

• SINA quits

  #81 opened 4 years ago by l-yampolsky
  6

• Detect ARB database type (fail on pt server internal type)

  #73 opened 4 years ago by gdauria
  3

• Sina abruptly ends with "Killed" and no information.

  #74 opened 4 years ago by TorkelE
  9

• double free (concurrency bug)

  #66 opened 4 years ago by epruesse
  1

• sina keeps rebuilding pt-server from scratch

  #90 opened 4 years ago by IBG-5-KIT
  2

• SINA not processing fasta files that have been filtered using vsearch

  #89 opened 4 years ago by dpar21
  2

• Replace LCA classifier

  #88 opened 4 years ago by epruesse
  2

• Disable progress bars

  #85 opened 5 years ago by nr0cinu
  5

• SINA alternatives

  #83 opened 5 years ago by ayixon
  1

• how to ask SINA to save taxonomy search results from multiple runs into 1 file, but not save alignments?

  #80 opened 5 years ago by l-yampolsky
  2

• SINA not running

  #77 opened 5 years ago by tia-das
  1

• SINA not running. showing Gave up (Reason: ARB ERROR: Expected entry 'baseoff' is missing for species 'A6BReg23' and Error during program execution: Failed to (re)build PT server index! (out of memory?)

  #79 opened 5 years ago by tia-das
  1

• SINA in ARB_EDIT4 not working

  #76 opened 5 years ago by mkorlevic
  3

• update SINA

  #78 opened 5 years ago by tia-das
  1

• LC_ALL requirement

  #72 opened 5 years ago by geboro
  2

• Updating the version in Bioconda

  #69 opened 5 years ago by Finesim97
  10

• Hande SIGWINCH in progress

  #67 opened 5 years ago by epruesse
  1

• GPL software linking against non-free library

  #68 opened 5 years ago by tillea
  4

• cseq issues append warnings

  #59 opened 5 years ago by epruesse
  1

• Alignment stealing uses character compare

  #63 opened 5 years ago by epruesse
  0

• Internal search ignores several options

  #57 opened 5 years ago by epruesse
  1

• Align reduces family if --realign

  #64 opened 5 years ago by epruesse
  0

• Control edge gap weights

  #60 opened 5 years ago by epruesse
  0

• Improve classifier

  #62 opened 5 years ago by epruesse
  0

• Internal search ignores --fs-no-fast

  #58 opened 5 years ago by epruesse
  0