16s

There are 89 repositories under 16s topic.

  • nf-core/ampliseq

    Amplicon sequencing analysis workflow using DADA2 and QIIME2

    Language:Nextflow182145338114

  • FOI-Bioinformatics/flextaxd

    FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

    Language:Python643357

  • rdpstaff/RDPTools

    Collection of commonly used RDP Tools for easy building

    Language:Makefile49143852

  • Russel88/DAtest

    Compare different differential abundance and expression methods

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  • epruesse/SINA

    SINA - Reference based multiple sequence alignment

    Language:C++417894

  • Russel88/MicEco

    Various functions for analysis of microbial community data

    Language:R4142811

  • microsud/microbiomeutilities

    The is mostly a wrapper tool using phyloseq and microbiome R packages.

    Language:R335297

  • ycl6/16S-rDNA-V3-V4

    16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

    Language:R334718

  • shandley/Microbiome-Analysis-Using-R

    Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.

    Language:HTML278024

  • KlausLi/Esp-Seplos-Controller

    Seplos Controller mit Webseite Der Esp8266 ist über ein Rs485 Modul mit dem Seplos BMS verbunden und kann diesem seine Daten entlocken. Shutdown Button: Das BMS wird ausgeschaltet , selbe Art als ob man länger auf dem BMS tastschalter bleibt. Kurzum die Firmware die es hier zum Download gibt, liest das Bms aus und es lässt sich per Button Klick abschalten. Es fehlen derzeit noch die Warnings . Was kann der ESP8266 Seplos Controller : Mqtt Schnittstelle, Payload ist ein Json Array , die Topic Addressen werden in der ESP Weg UI angezeigt und sind für jeden Esp induviduell unique. Http Schnittstelle, Daten werden als Json Array ausgegeben SAVE CONTROLER Button ist für spätere Funktionen reserviert Derzeit kann nur ein BMS damit ausgelesen werden, Multipackreading ... coming soon Die SOC Zeile blinkt wann es einen Discharge oder Charge übers BMS gibt, ansonsten bei Current==0 , bleibt die Zeile weiss und blinkt nicht. Die SOC Spalte ist wie im Batteriemonitor farbig 0-30% red, 30-50% yellow, 50-100% green! Esp Herzschlag bekommt die zusätzliche Bezeichnung DIS anghängt wann die Batterie Leistung abgeben muss!

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  • microgenlab/porefile

    A Nextflow full-length 16S profiling pipeline for ONT reads

    Language:Nextflow23545

  • wijerasa/bioinformatics-projects

    A Collection of Bioinformatics Projects

    Language:Python18309

  • pnnl/hundo

    :100: Snakemake-based amplicon processing protocol for 16S and ITS sequences.

    Language:HTML146145

  • quadram-institute-bioscience/dadaist2

    Dadaist2 🟨 Highway to R

    Language:HTML133205

  • smdabdoub/phylotoast

    Tools for phylogenetic data analysis including visualization and cluster-computing support.

    Language:Python136174

  • ifremer-bioinformatics/samba

    Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

    Language:Nextflow12355

  • itsmisterbrown/microfiltR

    accessory functions for processing microbial community data

    Language:R122311

  • ElDeveloper/dogs

    Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"

    Language:Jupyter Notebook11205

  • microUCPH/amplicon_data_analysis

    Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project

    Language:HTML11286

  • adriaaula/dada2_guidelines

    A repository with a general dada2 pipeline for amplicon processing

    Language:R8405

  • ohnosequences/db.rna16s

    A comprehensive, compact, and automatically curated 16S database

    Language:Scala88390

  • segalmicrobiomelab/lung_cancer_microbiome

    Language:R8202

  • biocorecrg/microbiome_procedures

    Mothur procedures for 16S and ITS analysis

    Language:R6608

  • carden24/V-Xtractor

    Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

    Language:Perl6232

  • GenomicaMicrob/OTUsamples2krona

    Simple script to generate Krona charts for all samples in an OTU table file

    Language:Shell6322
  • mTAGs

    SushiLab/mTAGs

    Language:Python6632

  • philippmuench/AIH_metagenome

    code to reproduce AIH results

    Language:R5433

  • ycl6/16S-Demo

    Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output

    Language:R5205

  • BenbowLab/BenbowLab.github.io

    Benbow Lab at Michigan State University, Tutorials/example data for analysis of: 16S data, VCF files

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  • Brochado-Kith/microbiome_analysis

    The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.

    Language:R3101

  • cafferychen777/MicrobiomeStat-Turtorial-Professional-Version

    MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.

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  • dizak/mothulity

    Easy-to-use tool facilitating work with Mothur.

    Language:JavaScript32983

  • erictleung/dada2HPCPipe

    :ocean: 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM

    Language:R33272

  • Headonpillow/16S_analysis

    A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.

    Language:R3100

  • pjtorres/16S_amplicon_preprocessing_code

    Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code

    Language:Jupyter Notebook3100

  • vaxherra/MicrobiomeSLE

    Microbiome Study of Lupus Patients

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