sc-rna-seq

euxhenh/cellar

Interactive software tool for the assignment of cell types in single-cell studies.

mehdiborji/nanoranger

simplified cellranger for long-read data

czbiohub-sf/scRFE

Single-cell identity definition using random forest modelling and recursive feature elimination

NCBI-Codeathons/automated-sc-RNA-seq-analysis-in-the-cloud

KorkinLab/DUSC

Deep Unsupervised Single-cell Clustering (DUSC) is a hybrid approach for cell type discovery in scRNA-seq data.

metavannier/scRNAseq_analysis_workflow

Single-Cell RNA-seq analysis workflow for 10x Genomics data

EBrivio/sex_stress

Original scripts for the manuscript "Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus", Brivio et al. Cell Reports, 2023

CharlieSpackman/SC-GAN

Implementing GANs in the sc-RNA-Seq pipeline

GERMAN00VP/TFM_GERMAN_VALLEJO

My final project of the Master's in Bioinformatics and Computational Biology.

GiatrasKon/gastric-cancer-scRNAseq-data-analysis

This repository contains the code and data for the recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

gloknar/Protocolo-actualizado-R4

Optimización del protocolo de Xiao et al. para el análisis de scRNA-seq en R.

hyunsoo77/BC_tamoxifen_response

This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.

sabyadg/Github-Wilson_data_analysis

sc-RNA-seq data analysis of cardiac development in zebrafish

studyfranco/GNEA

In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.