sc-rna-seq
There are 16 repositories under sc-rna-seq topic.
earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
euxhenh/cellar
Interactive software tool for the assignment of cell types in single-cell studies.
mehdiborji/nanoranger
simplified cellranger for long-read data
czbiohub-sf/scRFE
Single-cell identity definition using random forest modelling and recursive feature elimination
KorkinLab/DUSC
Deep Unsupervised Single-cell Clustering (DUSC) is a hybrid approach for cell type discovery in scRNA-seq data.
metavannier/scRNAseq_analysis_workflow
Single-Cell RNA-seq analysis workflow for 10x Genomics data
EBrivio/sex_stress
Original scripts for the manuscript "Sex shapes cell-type-specific transcriptional signatures of stress exposure in the mouse hypothalamus", Brivio et al. Cell Reports, 2023
CharlieSpackman/SC-GAN
Implementing GANs in the sc-RNA-Seq pipeline
GERMAN00VP/TFM_GERMAN_VALLEJO
My final project of the Master's in Bioinformatics and Computational Biology.
GiatrasKon/gastric-cancer-scRNAseq-data-analysis
This repository contains the code and data for the recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.
gloknar/Protocolo-actualizado-R4
Optimización del protocolo de Xiao et al. para el análisis de scRNA-seq en R.
hyunsoo77/BC_tamoxifen_response
This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.
sabyadg/Github-Wilson_data_analysis
sc-RNA-seq data analysis of cardiac development in zebrafish
studyfranco/GNEA
In this reposity I will give you all script I created. All this script are specialised for one way : annalyse RNA-seq data.
maxozo/yascp
scRNA analysis pipeline