sciworkflows
There are 11 repositories under sciworkflows topic.
common-workflow-language/common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
common-workflow-language/cwltool
Common Workflow Language reference implementation
snakemake-workflows/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
snakemake-workflows/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
snakemake-workflows/dna-seq-varlociraptor
A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, pedigree, populations) via the unified statistical model of Varlociraptor.
snakemake-workflows/rna-seq-kallisto-sleuth
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
akcorut/kGWASflow
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
nodrogluap/tamor
Illumina Dragen cancer genome and transcriptome analysis automation using Snakemake
nikostr/dna-seq-deepvariant-glnexus-variant-calling
A Snakemake workflow for variant calling with DeepVariant, and optionally joint variant calling using GLnexus.
tomarovsky/BuscoClade
Snakemake pipeline to construct species phylogenies using BUSCOs