Issues
- 6
specify snakelike version during installation?
#71 opened by ceesu - 3
Issue running site-packages
#74 opened by bbidonb - 1
- 1
Failed to run with cutadapt
#72 opened by cchapus - 2
- 2
correct installation of workflow with R
#67 opened by ceesu - 7
Condition in samples.tsv is too specific
#53 opened by jonathandmoore - 4
Pipeline failing with cutadapt
#65 opened by aryazand - 0
- 4
annotation.bed file size zero
#17 opened by jy-nam - 2
rule rseqc_gtf2bed failing with test dataset
#25 opened by ScientistSMC - 8
fq1 is not None (rule align)
#11 opened by mgalland - 7
DESeq2 Plots Incorrectly Displayed
#27 opened by tjbencomo - 4
trim.smk file name
#42 opened by neavemj - 1
snakemake version 5.9.1 raised an error with get_deseq2_threads called as a pointer
#26 opened by ginolhac - 1
SyntaxError in line 14 of Snakefile
#45 opened by Blosberg - 1
read_distribution.py
#50 opened by Moonerss - 4
count-matrix.py
#32 opened by sunhuaiyu - 1
Costum genome as reference
#55 opened by seb-mueller - 1
config.yaml defaults
#43 opened by neavemj - 1
Error in code
#54 opened by bhimbbiswa - 3
- 2
Data availability?
#56 opened by vsoch - 3
snakedeploy fails to deploy workflow
#34 opened by vkkodali - 1
Pipeline is delisted in Snakemake workflow catalog
#51 opened by aerval - 18
- 4
- 3
Missing input files for rule rseqc_gtf2bed
#23 opened by EasyPiPi - 2
- 2
`count-matrix.py` isn't for stranded RNA-seq protocols
#18 opened by matrs - 2
Adjusting output based on multiple types of input (single end vs paired end)
#6 opened by john-lee-johnson - 1
rseqc version 3.0.0
#16 opened by sschmeier - 10
Prefered way to do several idependent runs
#15 opened by sschmeier - 3
- 2
- 2
- 2