Pinned Repositories
DENR
Select the most actively transcribed transcript model using PRO-seq
SimPol
UniMod
blumberg_et_al
Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
CD4-Cell-Evolution
Analyses for an initial paper on the evolutionary CD4+ T-cell PRO-seq datasets.
courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
de_novo_miRNA
Run or die in the evolution of new microRNAs
DENR
Select the most actively transcribed transcript model using PRO-seq
EasyPiPi.github.io
Personal website
SimPol_R
Simulator of Polymerases
EasyPiPi's Repositories
EasyPiPi/SimPol_R
Simulator of Polymerases
EasyPiPi/blumberg_et_al
Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data
EasyPiPi/CD4-Cell-Evolution
Analyses for an initial paper on the evolutionary CD4+ T-cell PRO-seq datasets.
EasyPiPi/courses
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
EasyPiPi/de_novo_miRNA
Run or die in the evolution of new microRNAs
EasyPiPi/DENR
Select the most actively transcribed transcript model using PRO-seq
EasyPiPi/EasyPiPi.github.io
Personal website
EasyPiPi/flo
Same species annotation lift over pipeline.
EasyPiPi/gene_lists
List of gene lists for genomic analyses.
EasyPiPi/gitignore
A collection of useful .gitignore templates
EasyPiPi/histone-mark-imputation
Repo for the histone imputation project.
EasyPiPi/learning_docker
Getting started with Docker
EasyPiPi/polymeraseWaves
Identifies Pol II 'waves' in GRO-seq or PRO-seq with support for bigWig files.
EasyPiPi/PRMLT
Matlab code of machine learning algorithms in book PRML
EasyPiPi/proseq2.0
Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing
EasyPiPi/pyprobml
Python code for "Probabilistic Machine learning" book by Kevin Murphy
EasyPiPi/r4ds
R for data science
EasyPiPi/RNA-SEM
RNA structural equation modeling
EasyPiPi/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
EasyPiPi/rstudio-server-conda
Run Rstudio Server in a conda environment
EasyPiPi/SimPol_C
EasyPiPi/STAR
RNA-seq aligner
EasyPiPi/statsthinking21-core
Core statistical text for Statistical Thinking in the 21st Century
EasyPiPi/statsthinking21-R
R companion for Statistical Thinking in the 21st Century
EasyPiPi/tests-as-linear
Common statistical tests are linear models (or: how to teach stats)
EasyPiPi/UniMod