scrna
There are 20 repositories under scrna topic.
fanglu0411/sgs
SGS, is a user-friendly, collaborative and versatile browser for visualizing single-cell and spatial multiomics data.
genome/bfx-workshop
A course on genomics and bioinformatics from WU
berenslab/umi-normalization
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
ucdavis-bioinformatics-training/2017_2018-single-cell-RNA-sequencing-Workshop-UCD_UCB_UCSF
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
klarman-cell-observatory/scPlot
Single cell interactive plotting tools
raevskymichail/epi-impute
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
bixBeta/TReX
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex
rnabioco/scRNA-seq-Cell-Ref-Matrix
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans
ucdavis-bioinformatics-training/So-you-want-to-do-a-Single-Cell-RNA-seq-experiment
So you want to do a: Single Cell RNA-seq experiment
alperoglu/ASTRID
Tool for quick and standardized annotation of single cell transcriptomics data
ForwardStar/sctreeshap
An effective tool for single-cell RNA sequencing.
j-andrews7/KnowledgeDump
Gotta keep the brain empty to learn more. This is my easily digestible backup.
ylaboratory/seismic
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
ethan-mccarthy/scrnahelper
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
jjuhyunkim/sceQTL_lungAirwayOrganoid
This repository contains pipelines and scripts for analyzing single-cell eQTL data using mixed models, which enable the control of structured expression data with the Julia programming language.
ngshasan/single-cell-RNA-Seq-Data-Analysis-Methods
single-cell-RNA-Seq-Data-Analysis-Methods
Charlene717/H5AD_PRJCA001063_PDAC
Creater: Charlene717
TomKellyGenetics/cellranger_clean
10x Cell Ranger Docker Image
TomKellyGenetics/UniverSCAFE
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data