secondary-structure
There are 38 repositories under secondary-structure topic.
chao1224/ChatDrug
LLM for Drug Editing, ICLR 2024
lbcb-sci/RiNALMo
RiboNucleic Acid (RNA) Language Model
mircare/Porter5
Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes
eternagame/EternaBrain
Deep learning to solve RNA design puzzles
febos/SQUARNA
RNA secondary structure prediction tool
fryzjergda/DesiRNA
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
mircare/Brewery
State-of-the-art ab initio prediction of 1D protein structure annotations
taneishi/CB513_dataset
CB513 datasets for Protein Secondary Structure Prediction
alrojo/biRNN-CRF
Researching the forward-backward algorithm
carushi/ParasoR
Parallel solution for local RNA secondary structure analysis
MoseleyBioinformaticsLab/jpredapi
Python library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server
nezix/CPPCartoon
Cartoon mesh generation for secondary structure of proteins in C++
ViennaRNA/drforna
Interactive visualization of cotranscriptional folding
eliza-m/CrossSpeciesWorkflow
CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid modification, sumoylation, etc).
MurrellGroup/AssigningSecondaryStructure.jl
Simplified DSSP algorithm implemented in Julia
Arty40m/nskit
RNA/DNA secondary structure library for processing it as a graph, reading and writing
carushi/reactIDR
Evaluation of the statistical reproducibility of high-throughput structural analyses for a robust RNA reactivity classification
GEC-git/AptaMat
Python application to compare ssNa secondary structures
gkoulouras/seq-sec-ratio
A console application for the estimation of the primary and secondary structure's elements. Input should be the FASTA-formatted "ss.txt" file generated by PDB database.
ugerlevik/ggstride
Protein Secondary Structure Analysis and Visualization for Trajectories
fncnt/librna-sys
Unsafe low-level Rust bindings for the ViennaRNA package.
JMB-Scripts/Stride-to-Pymol
To assess the secondary structure of your protein with STRIDE in Pymol
yao-laboratory/RNAFoldAssess
Framework for benchmarking RNA secondary structure prediction algorithms.
d-wdj/KB8024
[SU/VT17] KB8024 - Protein Predictor Project (SupervisedMachineLearning)
dwndnt/Protein-Secondary-Structure-Prediction-with-SVM-and-GridSearch
This GitHub repository contains a machine learning project focused on predicting the secondary structure of proteins using Support Vector Machines (SVM) as the underlying predictive model. The predictive power of SVM is further optimized through hyperparameter tuning using GridSearch.
jeppeseverens/hemoPeptidesWord2Vec
Showcase of hemolytic activity prediction with Word2Vec features
JMB-Scripts/dssp-to-pymol
Assess the secondary structure in Pymol
MoseleyBioinformaticsLab/jpredapir
R library and CLI for submitting jobs to JPred - A Protein Secondary Structure Prediction Server
Rfam/rfam-2d-browser
Browse Rfam secondary structures by RNA type
tlemmin/peptideBuilder
VMD plug-in for building a peptide ab initio from backbone torsion angles or secondary structure
whl-usc/rna2d3d
Scripts and reference files relevant to the computational analysis of data generated by crosslink-ligation based experiments.
YaccConstructor/YC.Bio
Tools for metagenomic assembly processing.
bad-ants-fleet/drforna
Interactive visualization of cotranscriptional folding
GuideDesigner/DGD-Cas9
DGD-Cas9
matsunagalab/demo_ss_prediction
demonstration for predicting secondary structures
dfsp-spirit/ptgl-openapi
OpenAPI specification for the API of the Protein Topology Graph Library (PTLG).