single-molecule-imaging

There are 13 repositories under single-molecule-imaging topic.

  • hatzakislab/SEMORE

    SEMORE is a multi-layered density-based clustering module to dissect biological assemblies and a morphology fingerprinting module for quantification by multiple geometric and kinetics-based descriptors.

    Language:Python5100
  • sojourner

    sheng-liu/sojourner

    Statistical analysis of single molecule trajectories. (NB: The Sojourner.Pro featuring machine learning analysis is in the making, sign up on sojourner website for release: also, I am open for freelancing till the end of the pandemic, checkout the website for details).

    Language:R4212

  • takushim/tanitracer

    Python toolkit for 2D single-particle tracking (SPT) and reconstruction of super-resolution images.

    Language:Python3303
  • Actin-Filament-Bundling-Analysis

    biswa-mahanta/Actin-Filament-Bundling-Analysis

    MATLAB codes developed in Courtemanche lab at University of Minnesota for automating analysis of actin filament properties from single molecule microscopy images.

    Language:MATLAB2100

  • takushim/momomagick

    Python toolkit for 2D/3D image processing using CPU or GPU

    Language:Python1100

  • drbeiliu/beiliu

    Bei Liu's personal website

    Language:CSS0200

  • fregat17/ONi-THE-WAY

    A useful tool for working with Oxford Nanoimager microscope single-molecule localization data.

    Language:Jupyter Notebook0100

  • HarrisonGoldwyn/mispolarization

    Jupyter implementations of various features in the `misloc_package`, predicting mispolarization and mislocalization in plasmon-enhanced single-molecule imaging.

    Language:Jupyter Notebook0100

  • imrahilias/biophysics

    All this is part of my Projektarbeit (student project) @ TU Wien 2021

    Language:Jupyter Notebook0100

  • rkurre/SPT-Simulator

    Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.

    Language:MATLAB0100

  • takushim/momotrack

    A GUI application to assist manual object tracking in 2D/3D time-lapse images

    Language:Python0100

  • bencardoen/Colocalization.jl

    Colocalization metrics and distances for images or their sparse representations.

    Language:Julia18

  • shalinshah1993/temporalDNAbarcodes

    A MATLAB suite implementing computer vision pipeline to extract information from the noisy TIRF microscopy data (image stack)

    Language:MATLAB342