single-nucleotide-polymorphisms
There are 12 repositories under single-nucleotide-polymorphisms topic.
CBIIT/nci-webtools-dceg-linkage
LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. Each included application is specialized for querying and displaying unique aspects of linkage disequilibrium.
rdattafl/SNP-Data-Analysis-Project
A GitHub compiling the input data, Python and Jupyter Notebook scripts, and all relevant statistical outputs from running the AutoMLPipe-BC automated machine learning pipeline (from the Urbanowicz Lab - https://github.com/UrbsLab) on a large-scale single nucleotide polymorphism (SNP) dataset from patients with congenital heart disease (CHD)
cejdan/sarc-predictions
Code repository for my master's thesis project
MH-Lee/gwas_data_preprocessing
SNP(VCF format) data preprocessing for GWAS disease prediction
NicholasDominic/The-NucleoNets
A novel deep polygenic neural network for predicting and identifying yield-associated SNPs in Indonesian rice accessions.
darlenewagner/SNP_Wrap_Python
Facilitates post-processing of SNP pipeline outputs
hrmazumder/Simulate_a_SNP_Pair
Simulation of a pair of Single Nucleotide Polymorphisms (SNPs) and associated binary response (e.g., disease status) based on real SNP data in R.
miquelescobar/single-nucleotide-polymorphisms
Application of kernel methods to classify SNP's.
NicholasDominic/Stochastic-VIF-ID-Rice-SNPs
By leveraging ensemble learning, this program can be used to analyze the Linkage Disequilibrium between SNPs in each Indonesian rice chromosomes. Developed using Python 3.9.12.
tkmanabat/SARS-CoV-2-Clade-Identifier
SARS-CoV-2 Clade identifier with SNP data using machine learning.
ahmedmoustafa/genetic-ancestry
Genetic Ancestry
connor122721/SharedPolymorphismsDaphnia
Evolutionary genomics of shared mutations within the Daphnia pulex species complex.