snp-data

There are 18 repositories under snp-data topic.

  • privefl/bigsnpr

    R package for the analysis of massive SNP arrays.

    Language:R186847744

  • solgenomics/SNPbinner

    SNPbinner is a utility for the generation of genotype crossover points and binmaps based on SNP data across recombinant inbred lines.

    Language:Python3339620

  • EricArcher/strataG

    strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.

    Language:HTML25106011

  • JiscaH/sequoia

    R package for pedigree inference based on SNP data

    Language:Fortran257186

  • YaoLab-Bioinfo/ECOGEMS

    Efficient compression and retrieve of genotype data with integer sparse matrices

    Language:R16201

  • justincbagley/MAGNET

    Shell script pipeline for inferring ML gene trees for many loci (e.g. genomic RAD loci)

    Language:Shell6211

  • rtahmasbi/GeneEvolve

    A fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data

    Language:C++6314

  • igsr/igsr_analysis

    This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data

    Language:Jupyter Notebook4835

  • daormar/snptools

    Package to work with single nucleotide polymorpishms (SNPs)

    Language:M43300

  • CNuge/miscellaneous_scripts

    Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk

    Language:Python120

  • SCCH-KVS/deepsnp

    The sourcecode of DeepSNP

    Language:Python1300

  • stefan-m-lenz/BMs4BInf2019

    Jupyter notebook with a multimodal DBM example on SNP and gene expression data

    Language:Jupyter Notebook1101
  • Rice-PCA-SNPs

    aangush/Rice-PCA-SNPs

    An analysis of SNP data from many rice genome samples. Includes PCA, MDS plots, processing with fastStructure, visualizing results

    Language:HTML0100

  • dabne003/Unsupervised-Machine-Learning

    Principal Component Analysis, PCA, Gaussian Markov Random Fields, Graphical model,

    Language:R0000
  • Simulate_a_SNP_Pair

    hrmazumder/Simulate_a_SNP_Pair

    Simulation of a pair of Single Nucleotide Polymorphisms (SNPs) and associated binary response (e.g., disease status) based on real SNP data in R.

    Language:R0100

  • RaulCoroban/EnsembleFeatureSelector_MinorThesis

    Swapping algorithm analysis to aid Ensemble Feature Selection

    Language:TeX0200

  • SinomeM/QCtreeCNV

    Powerful CNV calls filtering pipeline. Focused on fixed loci calling, before visual inspection.

    Language:R02200

  • codecreatede/pangenealign.jl

    julia implementation for the analysis of pangenes

    Language:Julia