/QCtreeCNV

Powerful CNV calls filtering pipeline. Focused on fixed loci calling, before visual inspection.

Primary LanguageROtherNOASSERTION

QCtreeCNV

Build Status

Introduction

This R package implement a powerful CNV filtering pipeline as exemplified in the following figure. It is part of a protocol with a companion repository, https://github.com/SinomeM/IBPcnv.

If you use thih software please cite https://doi.org/10.1002/cpz1.621

CNVpipeline

The filtering pipeline

The filtering pipeline is implemented as a decision making tree, a series of consecutive steps that separate good putative candidates form bad ones. This scheme describe the process.

QCtree

Install

You can install the package via:

devtools::install_github("sinomem/QCtreeCNV")

Details

See the package vignettes for more details. Assuming the package is installed in your system you can do:

browseVignettes("QCtreeCNV")