spike-sorting
There are 66 repositories under spike-sorting topic.
SpikeInterface/spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
MouseLand/Kilosort
Fast spike sorting with drift correction
csn-le/wave_clus
A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering
ramintoosi/ROSS
Robust Offline Spike Sorter
SpikeInterface/spikeextractors
Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.
spyking-circus/spyking-circus
Fast and scalable spike sorting in python
akcarsten/spike_sorting
Python implementation of signal processing techniques and K-means clustering to sort spikes.
paninski-lab/yass
YASS: Yet Another Spike Sorter
LiuLab-Bioelectronics-Harvard/SpikeAgent
SpikeAgent is a multimodal LLM-based AI agent that automates and standardizes the spike sorting pipeline
SpikeInterface/spiketoolkit
Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
jniediek/combinato
Automatic spike sorting, cluster visualization, spike sorting GUIs
mhhennig/HS2
Software for high density electrophysiology
scratcharchive/mountainsort_examples
Examples of using MountainSort spike sorting software.
SpikeInterface/spikesorters
Python-based module with spike sorter wrappers and a simple API for running them.
flatironinstitute/dendro-old
Analyze neuroscience data in the cloud
sg-s/crabsort
🦀🦀🦀 Sort spikes from extra-cellular recordings using neural networks. Fully automated.
SpikeInterface/spikely
A GUI for running popular spike sorting algorithms on extracellular data of any file format.
jwouters91/shybrid
a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance
lavanv1107/deepspikesort
An automated, end-to-end, machine-learning-based spike sorting pipeline following the DeepCluster method
LiuLab-Bioelectronics-Harvard/AutoSort
Stable and aligned spike sorting and decoding over long-term recordings in BCI
njh27/spikesorting_fullpursuit
Neural spike sorting algorithm based on iso-cut clustering and template matching in raw voltage space for the detection of near-simultaneous spike events.
spyking-circus/spyking-circus-ort
Offline real time (ort) implementation of SpyKING CIRCUS
tk-neuron/GLMCC
Python Implementation of GLMCC (generalized linear model for spike cross-correlations)
msdkhani/PyWaveClus
WaveClus: Unsupervised Spike Sorting Algorithm
christophe-pouzat/PouzatDetorakisEuroScipy2014
A reproducible document with an extended version of SPySort: Neuronal Spike Sorting with Python Proceedings of the 7th European Conference on Python in Science (EuroSciPy 2014), edited by Pierre de Buyl and Nelle Varoquaux, pp. 27–34.
sg-s/spikesort
[no longer supported] for a more powerful version of this that supports multiple channels and uses machine learning, look here ➡️
tbrouns/paser
PASER: Processing and Analysis Schemes for Extracellular Recordings
Aleman-Z/spikesorting
Automatic and manual spike sorting based on SpikeInterface
ArdeleanRichard/Autoencoders-in-Spike-Sorting
A study of how autoencoders fare in the domain of Spike Sorting. Various autoencoder architectures have been tested.
delunapaolo/OSSA
OSSA (Open-Source Sorting Algorithm) is an interactive software for manual curation of neural spikes.
edmerix/NeuroClass
A couple of Matlab classes to make handling spike sorting data substantially easier
edmerix/UnitSubclassify
GUI for semi-automatic single neuron classification by cell type
mzabolocki/SynaptiConn
A Python package for analyzing single-unit spike-sorted data to infer synaptic connections in neural circuits.
psambit9791/SpikeSort
Identification of the cell body of neurons from spike signals
scott-grimes/SpikeSort
Semi-Automated Spike Sorting in Matlab, Various Techniques