splice-junctions

EI-CoreBioinformatics/portcullis

Splice junction analysis and filtering from BAM files

Kuanhao-Chao/splam

✂️ Deep learning-based splice site predictor that improves spliced alignments

guigolab/ipsa-nf

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

dieterich-lab/primex

jnoms/SV40_transcriptome

Toolkit and pipeline for processing short- and long-read RNA sequencing data.

nalaekaw/exon_intron

Deep neural network for splice sites prediction

biofcallejas/pysplicing

Splicing assembly for non-model organisms using RNAseq data

dpatrinos/PrimerDesigner

A tool to create sequences for primers targeting exon-exon splice junctions

lcscs12345/riboss

Comparison of the ability of open reading frames to recruit ribosomes within individual transcripts

sivkri/RNASeq-Analysis-JunctionSeq-QoRTs

This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.

SoniaRuiz/splicing-accuracy-manuscript

Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".

Moeinh77/DNA-sequene-classificaiton

Classification of Splice Junction sites using Neural Networks with Python and Keras