strobemers

There are 5 repositories under strobemers topic.

  • ksahlin/strobealign

    Aligns short reads using dynamic seed size with strobemers

    Language:C++125916216

  • ksahlin/ultra

    Long-read splice alignment with high accuracy

    Language:Python5942310

  • CMU-SAFARI/BLEND

    BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)

    Language:C341253

  • shenwei356/strobemers

    A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)

    Language:Go1440

  • luispedro/strobefilter

    Benchmarking pre-filtering large databases before short-read mapping

    Language:Python110