ksahlin/ultra

Issues

• UnboundLocalError: local variable 'i' referenced before assignment

  #22 opened 3 months ago by rkworkhelp1
  4

• Ultra index failed

  #26 opened 6 months ago by Yangliu9ReviR
  1

• Failed in building index

  #24 opened 8 months ago by FadelBerakdar
  3

• Can I use ultra to align est to references

  #23 opened a year ago by xiekunwhy
  1

• Bug with uLTRA align : TypeError: bad argument type for built-in operation

  #21 opened a year ago by laetitiarialland
  3

• Error: invalid feature coordinates (end<start!) at line:

  #20 opened 2 years ago by 5Tony
  1

• Can not access local variable 'read_mems_tmp' when using --use_NAM_seeds

  #19 opened 2 years ago by FadelBerakdar
  2

• Genomes FASTA/GTF files needed to run the evaluation

  #18 opened 2 years ago by FadelBerakdar
  4

• Out of bound reads

  #17 opened 2 years ago by sguizard
  13

• Alignment outside of contig

  #2 opened 2 years ago by MatthiasLienhard
  11

• a bug of `--alignment_threshold`

  #16 opened 3 years ago by ATPs
  1

• BUG -4294967296

  #14 opened 3 years ago by sguizard
  8

• Controlling (high) uLTRA RAM usage

  #15 opened 3 years ago by pre-mRNA
  1

• How to control minimap 2 parameters during uLTRA alignment

  #6 opened 3 years ago by pre-mRNA
  6

• error when aligning direct RNA data during revcomp script

  #4 opened 4 years ago by pre-mRNA
  3

• Cigar is None

  #13 opened 3 years ago by martinhaagmans
  2

• CIGAR string starts/ends with N

  #11 opened 3 years ago by zhixue
  7

• Mapping with uLTRA without GTF?

  #12 opened 3 years ago by unique379r
  3

• ultra installation and run error

  #10 opened 3 years ago by unique379r
  7

• Python bindings?

  #9 opened 3 years ago by cnk113
  1

• Non-absolute paths don't resolve

  #8 opened 3 years ago by lassefolkersen
  5

• uLTRA + SQANTI3

  #7 opened 3 years ago by FJPardoPalacios
  2

• KeyError when running test pipeline

  #5 opened 4 years ago by DrOllyGomez
  3

• unclear/wrong argument description of uLTRA align in help

  #1 opened 4 years ago by MatthiasLienhard
  4

• If malformatted fastq, uLTRA silently aligns only a subset of reads

  #3 opened 4 years ago by ksahlin
  0