Pinned Repositories
30-Days-of-Python
Learn Python for the next 30 (or so) Days.
AGAT
Another Gtf/Gff Analysis Toolkit
APPLS
Applied Python Programming for Life Scientists
arriba
Fast and accurate gene fusion detection from RNA-Seq data
automate-cv-rmd
Automate your CV - easy as 1, 2, knit! A workshop to get from data to professional CV using R Markdown presented at R-Ladies Melbourne
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
bedqc
BED QC tool (in the making)
strspy
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
unique379r's Repositories
unique379r/strspy
STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed specifically for long-read sequencing reads such as from Oxford nanopore technology (ONT) and PacBio.
unique379r/AGAT
Another Gtf/Gff Analysis Toolkit
unique379r/arriba
Fast and accurate gene fusion detection from RNA-Seq data
unique379r/automate-cv-rmd
Automate your CV - easy as 1, 2, knit! A workshop to get from data to professional CV using R Markdown presented at R-Ladies Melbourne
unique379r/bedqc
BED QC tool (in the making)
unique379r/bioinfo-scripts
General purpose scripts
unique379r/brownbear-isoseq-act-hib
Code for Long-read isoform sequencing reveals tissue-specific isoform expression between active and hibernating brown bears (Ursus arctos)
unique379r/cbs-mirseq
CBS-miRSeq: a robust comprehensive bioinformatics pipeline for microRNA expression profiling by next generation sequencing.
unique379r/cDNA_Cupcake
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
unique379r/FixItFelix
unique379r/FuSViz
A web app to visualise, interpret and prioritise genomic/transcriptomic structural variations (SVs) of multiple samples.
unique379r/GeneVar2
unique379r/getSequenceInfo
A Perl script allowing to get sequence information from GenBank, RefSeq or ENA sequence repositories
unique379r/ggtranscript
Visualizing transcript structure and annotation using ggplot2
unique379r/intervene
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
unique379r/isoseq
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
unique379r/levioSAM
Lift-over alignments from variant-aware references
unique379r/Liftoff
An accurate GFF3/GTF lift over pipeline
unique379r/LIQA
Long-read Isoform Quantification and Analysis
unique379r/pkg-building
unique379r/python-data-visualization
Python Data Visualization course code and examples
unique379r/RNA-Seq_analysis
scripts for RNA-Seq analysis
unique379r/RNAseq2func
A comprehensive RNA analysis from sequence to function and pathway reporting
unique379r/rnaxsv
unique379r/seq2func
A comprehensive RNA analysis from sequence to function and pathway reporting
unique379r/snakemake-wrappers
:snake: Snakemake wrappers for bioinformatics.
unique379r/straglr
unique379r/svxplorer
unique379r/T2T-CHM13-hub
Assembly hub for T2T CHRM13 assemblies
unique379r/YouTubeTutorials