synbio
There are 33 repositories under synbio topic.
bebop/poly
A Go package for engineering organisms.
Edinburgh-Genome-Foundry/DnaChisel
:pencil2: A versatile DNA sequence optimizer
TimothyStiles/how-to-synbio
The resources I always recommend to new synthetic biologists.
brsynth/RetroPathRL
Reinforcement Learning based bioretrosynthesis tool
Edinburgh-Genome-Foundry/codon-usage-tables
:bar_chart: Codon usage tables in code-friendly format + Python bindings
JBEI/KineticLearning
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
Edinburgh-Genome-Foundry/genome_collector
:stars: Easily download genomes and build BLAST/Bowtie indexes in Python
Koeng101/dnadesign
A Go package for designing DNA.
BiocomputeLab/paraSBOLv
A lightweight Python library designed to simplify the development of tools that render SBOL Visual diagrams.
brsynth/rp2paths
RetroPath2.0 to pathways
CamelCaseCam/CadBerry
An IDE for synthetic biology
Edinburgh-Genome-Foundry/genedom
Batch domestication of genetic parts with Python
JBEI/edd
Repository of standardized biological experimental data and metadata
robertosolari/BioTech-Resources
Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic
JacobGrisham/Synthetic-Biology-LIMS
(In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Python, Django, Redis, and PostgreSQL. Separate servers for LIMS and Payments hosted on AWS EC2 instances with Kubernetes and circleci CI/CD. Database hosted on AWS DynamoDB. CDN through AWS Cloudfront and DNS through Google Domains.
olgatsiouri1996/biomisc
collection of miscellaneous command line bioinformatic scripts
brsynth/RetroPath2-wrapper
Python wrapper for Retropath2.0 Knime workflow
brsynth/rptools
Suite of tools that work on rpSBML format
ayaanhossain/nrpcalc
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems
mycql/yapv
A library for creating plasmid feature maps with zero external dependencies.
Zulko/bricks_and_scissors
Blog on the computational side of synthetic biology and DNA manufacturing
SynBioDex/sboljs3
A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js
JBEI/PIACE
Parallel Integration and Chromosomal Expansion of Metabolic Pathways Machine Learning Analysis
olgatsiouri1996/bioinfo_gui_scripts
python scripts that can be easily trasformed to gui programs for wet lab scientists to use
AatishDA1/SynBioSource
SynBio Source is an open-source platform designed for the Synthetic Biology community, enabling easy sharing and management of datasets. It offers intuitive uploading and searching capabilities, with the goal of fostering a unified metadata standard to enhance accessibility and collaboration within the field.
AatishDA1/SyntheticDataGeneration
This is a repository containing code to generate Synthetic Datasets for software-development applications within the field of SyntheticBiology.
brsynth/rp2biosensor
Build Sensing-Enabling Metabolic Pathways from RetroPath2.0 output
brsynth/rpbasicdesign
Convert rpSBML file to SBOL + CSV files ready to be used by DNA-Bot.
flapjacksynbio/flapjack_api
This repository contains the source code, documentation, and instalation instructions for the Flapjack API
ChlamyMarburg/ChloroplastTools
Advancing chloroplast synthetic biology through high-throughput plastome engineering of Chlamydomonas reinhardtii
LSIcking/icking.github.io
Repository for projects made by Leon-Samuel Icking
sunnyosun/N2-paper-analysis
Analysis of yeast fusion chromosomes paper - Luo18