tandem-repeats
There are 29 repositories under tandem-repeats topic.
bcgsc/straglr
Tandem repeat expansion detection or genotyping from long-read alignments
yangao07/TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
TravisWheelerLab/ULTRA
ULTRA Locates Tandemly Repetitive Areas
ChaissonLab/danbing-tk
Toolkit for VNTR genotyping and repeat-pan genome graph construction
Xinglab/TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
TimD1/nPoRe
nPoRe: n-Polymer Realigner for improved pileup-based variant calling
Jong-hun-Park/trviz
A python library for decomposing and visualizing tandem repeat sequences
rezabehboudi/RPTRF
RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences
XuewenWangUGA/USAT
Universal STR Allele Toolkit (USAT) for viewing and comparison
acg-team/webSTR-API
WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs)
dancooke/tandem
A C++ tandem repeat finding library
mary060196/CISC5001_Research_Project_Implementing_TRed_Efficiently
C++ Tandem Repeats Detector -- Spring 2020 Independent Study Class in the Computer Science Department of Brooklyn College
jfjlaros/tssv
Targeted characterisation of short structural variation.
koeppl/distinct_squares
Computing All Distinct Squares
ShawHahnLab/chiimp
Computational, High-throughput Individual Identification through Microsatellite Profiling
avvaruakshay/looper
Looper is an ultrafast DNA tandem repeat identification tool which works on basic arithmetic rules.
hitbc/TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
M-iyazaki/DNA_Repeated_Sequence_Detector
This program can detect repeated sequences in DNA.
matteodelucchi/CRC_TRs
TRAL pipeline for tandem repeat detection in proteins. Specifically in such which are related to colorectal cancer.
petermchale/trfermikit
Discover VNTR-associated DELs that are hard to find using Illumina reads
rashidalabri/awesome-repeat-dna
š§¬ A curated list of awesome resources for repeat DNA research
ShawHahnLab/chiimp-paper
Supporting code for the microsatellite genotyping paper introducing CHIIMP
M-iyazaki/DNA_Sequence_Detector
This program can detect the already-known sequence in DNA.
matteodelucchi/TRALResultAnalysis
R package to get the most out of the results from TRAL
quintinm-dev/TandemRepeatDetection
Implementation of a cool tandem repeat detection algorithm
ssi-dk/cdiff_fbi
Typing of Clostridioides difficile isolates using NGS data (reads and contigs) based on tandem repeat loci (TR6, TR10), and toxin genes (cdtA, cdtB, tcdA, tcdB, tcdC).
meghanamadineni/TandemRepeats
Finding tandem repeats using Suffix Array Induced Sorting and Dynamic Programming methods.