tripal
There are 69 repositories under tripal topic.
isubit/tripal_jbrowse_api
A Tripal module that exposes Chado as a JBrowse-compatible REST API
tripal/tripal_analysis_go
This module is responsible for displaying reports from Gene Ontology (GO) analyses. This module contains a Gene Ontology Annotation Format (GAF) file loader to import GO terms assigned to features. Otherwise, GO assignments must already be loaded into the Tripal database using other data loaders (e.g. using the Tripal InterPro Analysis module or a GFF file)
tripal/tripal_analysis_interpro
This module extends the Tripal Analysis Module and provides a method for loading XML results from the InterProScan program. The module can load InterProScan XML v4 or InterProScan XML v5 generated from the command-line or web-based versions of InterProScan. Additionally, GO terms mapped by InterProScan can optionally be assigned to features.
tripal/tripal_network
Provides Tripal integration of biological networks including storage, loaders and visualzations
tripal/tripal_simpletest
This module can be used to develop functional tests on Tripal extensions that can be run on an existing site without disturbing its content. It's compatible with Drupal native test system.
UofS-Pulse-Binfo/genotypes_loader
A Drush-based loader for VCF files that follows the genotype storage rules outlined by ND genotypes.
UofS-Pulse-Binfo/tripal_daemon
Drupal/Tripal: Implements drush daemon to automatically run requested Tripal jobs.
isubit/tripal_downloads
Provides a content type for downloadable files that can optionally be used as JBrowse tracks
jcvi-plant-genomics/medicago-theme
MedicagoGenome.org Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.
jcvi-plant-genomics/medicago-tripal
Drupal/Tripal code for the MedicagoGenome.org site (MTGD)
UofS-Pulse-Binfo/analyzedphenotypes
Tripal/Drupal support for analyzed phenotypic data including data loaders, exporters, trait pages and summaries on germplasm pages.
UofS-Pulse-Binfo/tripal_qtl
Provides additional fields and data import which provide support for quantitative trait loci. Additionally, it integrates with Tripal Map through shared vocabulary terms and data storage models.
isumoc/drupal_tripal_travis_setup
Some example .travis.yml configs to use for testing Tripal/Drupal
LS-TripalTutorials/lstrptut_s4rnhy
A tutorial on how to create a Tripal/Drupal service for a Genome Assembly search/access Service using dependency injection.
statonlab/tripal_cmap_loader
simple cmap loader for Chado map module
statonlab/tripal_dev_seed
A minified bioinformatics dataset for seeding Tripal sites
tripal/tripal_analysis_unigene
DEPRECATED. This module is no longer needed for Tripal v3. Only major bug fixes will be considered for Tripal v2 sites that still use it. But, in summary, This module extends the Tripal v2 Analysis Module and provides visualization of Unigenes derived from ESTs.
tripal/tripal_dt
An example module released during PAG 2017 hackathon, that displays a D3JS tree from the phylonode table.
UofS-Pulse-Binfo/cross_management
Drupal:Tripal: Management of breeding program crosses integrating with Tripal Stock/Germplasm.
UofS-Pulse-Binfo/cvitembed
Tripal module to embed CViTjs diagrams into a Tripal site.
UofS-Pulse-Binfo/generate_trpdata
Generate various types of data for testing Tripal functionality
UofS-Pulse-Binfo/germ_summary
Provides a matrix describing the number of germplasm (chado.stocks) per organism combination.
UofS-Pulse-Binfo/kp_frontpage
Customize the frontpage of KnowPulse.
UofS-Pulse-Binfo/kp_nodes
Drupal/Tripal: KnowPulse Node-specific themeing.
UofS-Pulse-Binfo/kp_views
Drupal/Tripal: KnowPulse-specific Views
UofS-Pulse-Binfo/kptheme
The Theme for KnowPulse
UofS-Pulse-Binfo/lims_rawseq
Drupal/Tripal: Provides a simple node type for recording Sequencing Run details.
UofS-Pulse-Binfo/posconvert
Converts positions in a tab-delimited file (e.g. VCF) from Lc0.8 to Lc1.2
UofS-Pulse-Binfo/uofspb_germplasm
Drupal/Tripal: Provide support for germplasm.
UofS-Pulse-Binfo/user_charts
User-driven D3.js Charts that provide forms that allowing users to input data influencing D3.js charts.