UofS-Pulse-Binfo/genotypes_loader

Issues

• Could not find germplasm type 'accession' with the vocabulary 'GCP germplasm'

  #61 opened a year ago by risharde
  1

• PDOException: SQLSTATE[23502]: Not null violation: 7 ERROR: null value in column "type_id" violates not-null constraint

  #55 opened 3 years ago by cornellyujy
  6

• loading sample.vcf and samples.list

  #54 opened 3 years ago by cornellyujy
  6

• Loading Somatic data

  #53 opened 3 years ago by Xaiku
  4

• Preparing for Tripal Badge Request

  #48 opened 4 years ago by laceysanderson
  0

• Projects require a genus property

  #44 opened 5 years ago by bradfordcondon
  0

• error inserting sample data

  #37 opened 4 years ago by bradfordcondon
  1

• Change sample files to correspond to default Tripal terms

  #43 opened 4 years ago by laceysanderson
  1

• Update README to reflect new settings form and include drush examples

  #11 opened 4 years ago by carolyncaron
  0

• Chromosome error

  #50 opened 4 years ago by Xaiku
  6

• Allow the user to set the copy chunk size through the settings form

  #20 opened 6 years ago by carolyncaron
  0

• Prepare for First release and Tripal Badge

  #30 opened 4 years ago by Jiu9Shen
  2

• Official Documentation for release

  #24 opened 4 years ago by laceysanderson
  4

• Prep for Badge Request

  #49 opened 4 years ago by laceysanderson
  0

• Link markers to the project using the chado project_feature table

  #46 opened 4 years ago by carolyncaron
  1

• Error reported with psql 10+

  #27 opened 5 years ago by bradfordcondon
  8

• suggestion: example in the readme should use files in the example file folder

  #33 opened 5 years ago by bradfordcondon
  2

• readme says is_marker_of is from stock_relationship but its feature_relationship

  #36 opened 5 years ago by bradfordcondon
  1

• Parsing variant name from VCF ID column

  #38 opened 5 years ago by songtaogui
  6

• Bug: cannot insert genotype

  #23 opened 5 years ago by laceysanderson
  2

• why arent required cv terms inserted on install?

  #34 opened 5 years ago by bradfordcondon
  1

• Floating point values are ignored for metadata insertion from a VCF

  #29 opened 5 years ago by carolyncaron
  0

• Variant Types are currently not being stored.

  #21 opened 5 years ago by laceysanderson
  0

• Improve speed via COPY method

  #4 opened 5 years ago by laceysanderson
  2

• Expand the Settings Form to pull CV terms from different Controlled Vocabularies

  #15 opened 6 years ago by carolyncaron
  1

• Allow multiple organisms in a single load

  #2 opened 6 years ago by carolyncaron
  4

• Limit to support for PostgreSQL 9.3+

  #16 opened 6 years ago by carolyncaron
  1

• Make Tripal v3 Compatible.

  #9 opened 6 years ago by laceysanderson
  0

• Determine genotype call from PL field in VCF files

  #13 opened 7 years ago by carolyncaron
  0

• Best Practice for Inserting Required Terms

  #8 opened 7 years ago by ehsueh
  4

• Remove auto-detection of input file format

  #12 opened 7 years ago by carolyncaron
  0

• Improve flexibility of Genotype Matrix and Flat-file formats

  #10 opened 7 years ago by carolyncaron
  0

• Settings Page

  #1 opened 7 years ago by laceysanderson
  2

• Assign quality metrics to each genotype as they are loaded

  #5 opened 8 years ago by carolyncaron
  0

• Marker Type

  #3 opened 8 years ago by laceysanderson
  2