twas
There are 15 repositories under twas topic.
mancusolab/twas_sim
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
jinghuazhao/TWAS-pipeline
TWAS-pipeline
jinghuazhao/EWAS-fusion
Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
corbinq/GAMBIT
Tool for integrative gene-based association analysis using GWAS summary stats
greenelab/phenoplier
PhenoPLIER
tjiagoM/gtex-transcriptome-modelling
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
ChongWuLab/SUMMIT
Summary-level Unified Method for Modeling Integrated Transcriptome
szcf-weiya/MTWAS
R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
asthmacollaboratory/sage-geuvadis-predixcan
Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS
amanda-tapia/LocusXcanR
LocusXcanR: an R package that creates an R Shiny application that aids TWAS interpretation, can be extended to other ‘omics data, and highlights R Shiny’s effectiveness at presenting results in an approachable, interactive, and visual format.
danielsarj/TOPMed_MESA_crosspop_portability
Optimizing transcriptome prediction models for use in multi-ethnic TWAS using multivariate adaptive shrinkage.
greenelab/cimr
tool for continuously integrated meta-resource
aksarkar/gtex-fqtl
Factored QTL analysis applied to GTEx and GWAS of 114 complex traits
greenelab/cimr-d
client to the cimr-d database for continuous integration and analysis using cimr
christacaggiano/caviar
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.