greenelab/cimr

Issues

• Add analysis examples

  #70 opened 3 years ago by ypar
  0

• Anticipating files with different delimiters

  #47 opened 4 years ago by ypar
  1

• add in docker images for example analysis

  #8 opened 4 years ago by ypar
  1

• Add test cases for data types supported

  #34 opened 4 years ago by dongbohu
  1

• Object out of the loop

  #48 opened 4 years ago by ypar
  1

• macOS in parallel mode: log messages in child processes swallowed

  #67 opened 5 years ago by dongbohu
  2

• Catch exceptions in child processes

  #65 opened 5 years ago by dongbohu
  1

• self.genome_id and self.data['build']

  #62 opened 5 years ago by dongbohu
  3

• Redundant ref file downloading?

  #61 opened 5 years ago by dongbohu
  3

• Bug report: uncaught exception in EQTL test case

  #60 opened 5 years ago by dongbohu
  2

• Pandas 0.25.1 vs 1.0.0

  #58 opened 5 years ago by dongbohu
  1

• check_ensembl implementation

  #15 opened 5 years ago by ypar
  1

• Catalog updated before data processing

  #42 opened 5 years ago by dongbohu
  3

• ERROR or WARNING in log messages

  #44 opened 5 years ago by dongbohu
  2

• Global CATALOG not needed

  #45 opened 5 years ago by dongbohu
  2

• Add date and time in log?

  #43 opened 5 years ago by dongbohu
  1

• Bug in "multiple" data_type handling

  #39 opened 5 years ago by dongbohu
  4

• Avoid duplicates output files

  #37 opened 5 years ago by dongbohu
  1

• `download_file()` function in utils.py

  #30 opened 5 years ago by dongbohu
  1

• port newly added gwas into cimr-adb after all checks pass

  #11 opened 5 years ago by ypar
  1

• evaluate whether pandas is a necessary requirement

  #20 opened 5 years ago by ypar
  1

• compare input file coordinates to annotation reference

  #6 opened 6 years ago by ypar
  0

• add in READMEs

  #9 opened 6 years ago by ypar
  1

• input file checker for gwas and eqtl summary statistics submission

  #1 opened 6 years ago by ypar
  1

• Add a license

  #5 opened 6 years ago by cgreene
  1

• incorporate a ci service - tentatively travis for sanity checks on files

  #2 opened 6 years ago by ypar
  1

• write a readme with example input files

  #3 opened 6 years ago by ypar
  1