vep-annotation

There are 6 repositories under vep-annotation topic.

  • pstawinski/pygenebe

    PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing

    Language:Python6330

  • CERC-Genomic-Medicine/vep_pipeline

    Pipeline for variant annotation using Variant Effect Predictor (VEP)

    Language:Jupyter Notebook5402

  • bch-gnome/hpds_annotation

    Annotation pipeline for HPDS

    Language:Python3502

  • CansuDincer/BEstimate

    BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.

    Language:Python3111

  • GuilhermeBPinheiro/savep_v01.2022

    Pipeline para Anotação de Arquivo VCF de Variantes Somáticas utilizando o Ensembl Variant Effect Predictor (VEP) version 105.0 via Google Colab. O SAVEP_v01.2022 é de código aberto e está disponível no GitHub.

    2100

  • gcerchia/STRike

    Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)

    Language:Perl0100