wdl

There are 136 repositories under wdl topic.

  • scalability-tst

    Language:Roff3

  • capanno

    cwl/wdl/sm/nf files, tool and workflow metadata, and input specifications.

    Language:WDL9

  • cloud-interop-testing

    Interoperable execution of workflows using GA4GH APIs

    Language:Python9

  • somatic-variantcalling

    A pipeline for somatic variantcalling. Category:Single-Sample

    Language:WDL8

  • 2b2tMapDownloader

    A project to download 2b2t's map (WIP)

    Language:Java8

  • IPlug

    IPlug "Tale" Edition audio plugin framework.

    Language:C++7

  • swipe

    SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects

    Language:Python7

  • fungal-wdl

    Broad fungal method repository

    Language:WDL7

  • rna-seq

    bioinformatics pipelines

    Language:WDL7

  • analysis_pipeline_WDL

    Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.

    Language:WDL6

  • bfx-tools-wdl

    WDL tasks for commonly used BFX tools

    Language:WDL6

  • wdl-mode

    WDL (Workflow Description Language) major mode

    Language:Emacs Lisp6

  • sprocket-action

    Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

    Language:Shell5

  • wdl-ci

    Tools to validate and test WDL-based repositories. To be used as part of CI/CD pipelines

    Language:Python5

  • CDPHE-SARS-CoV-2

    Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.

    Language:WDL5

  • diy-cromwell-server

    A repo containing instructions for running a Cromwell server on Gizmo at the Fred Hutch. (Contact Amy Paguirigan for questions)

    Language:Shell5

  • MobiDL

    MobidicWDL workflows

    Language:WDL5

  • ir2h

    IR (WAV file) to C header file convertor.

    Language:C++5

  • metaAssembly

    Workflow for metagenome assembly

    Language:WDL4

  • sprocket-vscode

    Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).

    Language:TypeScript3

  • gowdl

    A Workflow Description Language (WDL) parser in Go.

    Language:Go3

  • WMS-benchmark

    Workflow management system benchmark

    Language:Shell3

  • wdl

    WDL-based pipelines

    Language:WDL3

  • pipeline-template

    A pipeline template for modular pipelines

    Language:WDL3

  • wdl4s

    Scala bindings for WDL

    Language:HTML3
  • AI2001_Category-Source_Code-SC-WDL

    AI2001_Category-Source_Code-SC-WDL

    🧠️🖥️2️⃣️0️⃣️0️⃣️1️⃣️💾️📜️ The sourceCode:WDL category for AI2001, containing WDL programming language datasets

    Language:R2

  • CDPHE-influenza

    Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.

    Language:WDL2

  • SRANWRP

    Wraps up some SRA-related utilities

    Language:WDL2
  • SNU_2D_ProgrammingTools_IDE_WDL

    SNU_2D_ProgrammingTools_IDE_WDL

    The WDL Programming language IDE submodule for SNU Programming Tools.

    Language:WDL2
  • Learn-WDL

    Learn-WDL

    A repository for showcasing my knowledge of the wdl programming language, and continuing to learn the language.

    Language:WDL2

  • wdl-viewer

    A web-based visualization tool to view (inter and inner) dependencies of WDL workflows.

    Language:Python2

  • compare_workflows

    Compare snakemake with nextflow and CWL, probably should combine this with desc_workflow repo

    Language:Nextflow2

  • bcc2020-training

    Training materials for our BCC 2020 training workshop.

    Language:Common Workflow Language2

  • dockstore-documentation

    The documentation for Dockstore.org

    Language:Shell2

  • QC

    A BioWDL workflow for gathering QC metrics on and prepocessing FASTQ files. Category:Single-Sample

    Language:WDL2

  • multifuzz

    Multi-band distortion plugin for VST audio hosts

    Language:C++2