whole-cell-modeling

There are 10 repositories under whole-cell-modeling topic.

KarrLab/wc_rules
Rule-based modeling for whole-cell models.
Language:Python10 6 73
KarrLab/wc_lang
Language for describing whole-cell models as reaction networks
Language:Python9 6 1433
KarrLab/wc_model_gen
Framework for systematically and scalably designing whole-cell models from large datasets
Language:Python5 10 172
KarrLab/wc_kb
Tools for building databases of experimental data for constructing whole-cell models
Language:Python3 7 315
SysBioInra/rbatools
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3
Language:Python2 1 02
KarrLab/wc_analysis
Tools for analyzing whole-cell knowledge bases, models, and simulation results
Language:Python1 7 01
KarrLab/wc_onto
Ontology for whole-cell modeling
Language:Python1 8 2
KarrLab/karr_lab_code
Code for the Karr Lab's code website
Language:PHP4 11
KarrLab/karr_lab_docs
Code for the Karr Lab docs website
Language:PHP8 1
KarrLab/wc_env_manager
Tools for managing computing environments for WC modeling
Language:Python8 21