KarrLab/wc_kb

Issues

• Have multiple types of evidence derived from one class

  #31 opened 5 years ago by paulflang
  0

• bug in io.Reader().run()

  #29 opened 5 years ago by artgoldberg
  1

• Make CLI work for prokaryotes and eukaryotes

  #30 opened 5 years ago by jonrkarr
  0

• Shorten prokaryote_schema and eukaryote_schema module names to prokaryote and eukaryote

  #16 opened 5 years ago by jonrkarr
  0

• Import `prokaryote_schema` and `eukaryote_schema` into `wc_kb.__init__`

  #18 opened 5 years ago by jonrkarr
  0

• Remove code needed to upgrade M. pneumoniae KB

  #25 opened 5 years ago by jonrkarr
  0

• Write tutorial as Jupyter notebook

  #28 opened 5 years ago by jonrkarr
  0

• Upload to PyPI

  #27 opened 5 years ago by jonrkarr
  0

• Write documentation

  #26 opened 5 years ago by jonrkarr
  0

• Support species type ids that start with numbers, including in reaction equations

  #23 opened 5 years ago by jonrkarr
  1

• Correct regular expressions in core and eukaryote module

  #24 opened 5 years ago by jonrkarr
  1

• Remove unused `pdb` import in `wc_kb.prokaryote_schema`

  #17 opened 5 years ago by jonrkarr
  0

• Parallel recent improvement to `wc_lang` in `wc_kb.core`

  #19 opened 5 years ago by jonrkarr
  0

• Encode M. pneumoniae knowledge base into`wc_kb`

  #20 opened 5 years ago by jonrkarr
  0

• Extend schema to represent the rest of the curated Mycoplasma pneumoniae data

  #7 opened 5 years ago by jonrkarr
  0

• Import/export with BioPAX

  #22 opened 5 years ago by jonrkarr
  0

• set_git_repo_metadata_from_path

  #21 opened 6 years ago by artgoldberg
  0

• Sychronize what obervables are in kb and lang

  #15 opened 6 years ago by szb37
  1

• Add additional sites to PromoterLocus

  #14 opened 6 years ago by bilalshaikh42
  1

• Decide how to handle explicit reactions

  #13 opened 6 years ago by artgoldberg
  0

• Use setUp() to simplify tests

  #12 opened 6 years ago by artgoldberg
  0

• Increase coverage of unit tests of core.py

  #11 opened 6 years ago by artgoldberg
  0

• Evaluate whether to convert wc_kb Observable to the same underlying methods as wc_lang Observable

  #10 opened 6 years ago by bilalshaikh42
  0

• Create tests for Observable serialization

  #9 opened 6 years ago by bilalshaikh42
  0

• Serialization issue in Species

  #8 opened 6 years ago by Ashwin-Srinivasan
  1

• enable wc_kb.core.KnowledgeBase to be constructed from outside model repo directories (or their children)

  #6 opened 6 years ago by jonrkarr
  1

• Make `cell` columns implicit in Excel format

  #2 opened 6 years ago by jonrkarr
  1

• Create command line program

  #1 opened 6 years ago by jonrkarr
  1

• Add io liberal (not strict) option

  #4 opened 6 years ago by jonrkarr
  1

• Add command line program similar to wc_lang

  #5 opened 6 years ago by jonrkarr
  1

• Speed up wc_kb.io.Reader.run with caching

  #3 opened 6 years ago by jonrkarr
  1