Pinned Repositories
address_book_image_folder
Sync your contacts pictures with a folder with jpg files (like Google Takeout)
ansible-galaxy
An Ansible role for managing a Galaxy server
ansible-nels_storage
Ansible role for installing NeLS Storage import and export tools in Galaxy
ansible-slurm
Ansible role for installing and managing the Slurm Workload Manager
evernote-export
Scripts I used when moving away from Evernote.
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
slurm-utils
Random scripts we've implemented at our local Slurm based cluster.
wdist
WDIST (Weighted DISTance calculator) tool supporting the BGI Cognitive Genomics Lab's data analysis pipeline, and designed to grow into a full-scale replacement for PLINK (eta early 2014). Since it uses streaming algorithms instead of keeping the entire dataset in memory, it can handle much larger files without the need for e.g. tedious chromosome splitting. It also incorporates numerous micro- (and a few macro-) optimizations which collectively speed up most of PLINK's slowest functions by factors exceeding 100x (and sometimes even exceeding 1000x).
torfinnnome's Repositories
torfinnnome/evernote-export
Scripts I used when moving away from Evernote.
torfinnnome/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
torfinnnome/slurm-utils
Random scripts we've implemented at our local Slurm based cluster.
torfinnnome/address_book_image_folder
Sync your contacts pictures with a folder with jpg files (like Google Takeout)
torfinnnome/ansible-galaxy
An Ansible role for managing a Galaxy server
torfinnnome/ansible-nels_storage
Ansible role for installing NeLS Storage import and export tools in Galaxy
torfinnnome/ansible-slurm
Ansible role for installing and managing the Slurm Workload Manager
torfinnnome/cigeneR
Different useful R functions for bioinformaticians
torfinnnome/astronvim_user
Local AstroNvim modifications
torfinnnome/astronvim_v4
AstroNvim v4 configuration
torfinnnome/cluster_pipelines
torfinnnome/dagobah-training
Galaxy Admin Training
torfinnnome/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
torfinnnome/dnsname
name resolution for containers
torfinnnome/docker-compose-grafana-influxdb
Scripts for running Grafana with InfluxDB as datasource.
torfinnnome/galaxy
Data intensive science for everyone.
torfinnnome/galaxy-admin-training-barcelona-2020
My Ansible training directories
torfinnnome/galaxy-admin-training-singularity
Deployment of a Galaxy server using Singularity for running jobs
torfinnnome/galaxy-tools
FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
torfinnnome/infrastructure-playbook
Ansible playbooks for managing usegalaxy.no.
torfinnnome/linuxbrew-automation
The code to build & install all the required software to run an Ensembl site.
torfinnnome/r_workshops
Repository for the CIGENE R workshops.
torfinnnome/scripts
Assorted scripts
torfinnnome/slurmmon
gather and plot data about Slurm scheduling and job statistics
torfinnnome/snptranslate
Translates between SNP formats
torfinnnome/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
torfinnnome/torfinnnome.github.io
torfinnnome.com
torfinnnome/training-material
A collection of Galaxy-related training material
torfinnnome/usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
torfinnnome/usegalaxy-no-tools
Tool yaml files for usegalaxy.no