Issues
- 0
Refactor Bloom filter code
#182 opened by torognes - 2
- 3
Option to output cluster member ids/sequence id?
#179 opened by koh-joshua - 1
- 5
- 1
Option to exclude seeds or clusters with low abundance
#176 opened by torognes - 2
- 4
Sort seeds by total mass before output
#133 opened by torognes - 14
- 8
Invalid numeric argument for option -t or --threads
#173 opened by Gian77 - 1
maximal header length
#171 opened by frederic-mahe - 9
Roadmap
#161 opened by frederic-mahe - 7
uc file question
#172 opened by dougwyu - 9
documentation: maximal input sequence length
#163 opened by frederic-mahe - 6
OTU table without abundance values
#168 opened by AshleyZhao20 - 3
Compiling fails on Windows
#169 opened by torognes - 2
continuous integration service
#158 opened by frederic-mahe - 3
Issues with plotting: OTU not found
#167 opened by naurasd - 7
way too many clusters?
#166 opened by Gian77 - 3
Link to new swarm 3 paper
#164 opened by lczech - 2
table formats for making OTU table from swarm results
#162 opened by SanniH - 3
macros for min() and max()?
#155 opened by frederic-mahe - 2
magic value?
#154 opened by frederic-mahe - 9
- 8
Installation issues
#159 opened by naurasd - 1
clustering of huge amount of reads
#156 opened by mariabernard - 3
swarm 3.0 on conda
#157 opened by Gian77 - 1
- 2
more amplicons with -d 2 than -d 1?
#150 opened by KabitaBaral1 - 32
code coverage 2: the gnarly cases
#146 opened by frederic-mahe - 2
restrict -x usage to d > 1
#153 opened by frederic-mahe - 3
Get rid of CityHash?
#152 opened by torognes - 6
- 5
Empty internal files after running swarm with -d 0
#148 opened by dcm9123 - 3
Does swarm work with nanopore short amplicons?
#145 opened by dcm9123 - 2
swarm 3.0: cppcheck report (low priority)
#149 opened by frederic-mahe - 25
Code Quality Benchmark (softwipe)
#135 opened by frederic-mahe - 4
amplicon sequence reconstruction with swarm?
#147 opened by KabitaBaral1 - 9
Measure code coverage
#130 opened by frederic-mahe - 3
code coverage for algod1.cc
#143 opened by frederic-mahe - 4
code coverage for derep.cc
#139 opened by frederic-mahe - 4
nw.cc: last lines not triggered by a test
#142 opened by frederic-mahe - 7
db.cc: condition is always true
#141 opened by frederic-mahe - 2
code coverage for db.cc
#140 opened by frederic-mahe - 2
support ambigous nucleotides N
#138 opened by sfehrmann - 3
- 1
DNA base characters other than ACGT
#134 opened by kemin711 - 1
pooled samples?
#132 opened by dcm9123 - 2
abundance values generator?
#131 opened by dcm9123 - 7
Makefile: add an "install" recipe
#129 opened by frederic-mahe