Geometric embedding of proteins with neural networks
Ideally, create a new virtual environment:
python -m venv gprot
source gprot/bin/activate
- Install pytorch:
- on linux:
pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu118
- macOS (Apple silicon)
pip3 install torch torchvision torchaudio
- Windows: not supported, but you can probably run the Docker image or install it somewhat natively using WSL
- install rest of requirements:
pip install -r requirements.txt