Pinned Repositories
bayes_data_analysis
A collection of notebooks that demonstrate Bayesian data analysis
gradient_estimators
A collection of gradient estimator implementation
SimString
This is a java implementation for a fast approximate string matching algorithm (SimString).
spectrum
A python library for data fusion
totucuong's Repositories
totucuong/spectrum
A python library for data fusion
totucuong/bayes_data_analysis
A collection of notebooks that demonstrate Bayesian data analysis
totucuong/gradient_estimators
A collection of gradient estimator implementation
totucuong/3DFI
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
totucuong/awesome-cto-resources
:bulb: A community-curated list of awesome resources to help you grow as a CTO
totucuong/CbAS
Code for the ICML 2019 paper 'Conditioning by adaptive sampling for robust design'
totucuong/cd4ml-workshop
Repository with sample code and instructions for "Continuous Intelligence" and "Continuous Delivery for Machine Learning: CD4ML" workshops
totucuong/cime
cime public repository
totucuong/DevOps-Books
Curated DevOps Books
totucuong/FLEXS
Fitness landscape exploration sandbox for biological sequence design.
totucuong/FSND
Public repository for the Full-Stack Nanodegree program.
totucuong/genesis
Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences
totucuong/ibm3202
Google Colab Tutorials for IBM3202
totucuong/idiomatic-vimrc
Guidelines for sculpting your very own ~/.vimrc.
totucuong/instagram-scraper
Scrapes an instagram user's photos and videos
totucuong/mac
PyTorch implementation for "Training and Inference on Any-Order Autoregressive Models the Right Way", NeurIPS 2022 Oral, TPM 2023 Best Paper Honorable Mention
totucuong/mc_gradients
totucuong/MLDE
A machine-learning package for navigating combinatorial protein fitness landscapes.
totucuong/OrgaQuant
Organoid Localization and Quantification Using Deep Convolutional Neural Networks
totucuong/PECAN
Help file for running the scripts to learn and evaluate graph convolution networks for epitope and paratope prediction
totucuong/PolyFold
An interactive visual simulator for distance-based protein folding
totucuong/pyrosetta-basic
totucuong/RoseTTAFold
This package contains deep learning models and related scripts for RoseTTAFold
totucuong/seqprop
Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
totucuong/topobuilder
Parametric Building of de novo Functional Topologies
totucuong/totucuong.github.io
totucuong/trDesign
trRosetta for protein design
totucuong/trdesign-pytorch
pytorch implementation of trDesign
totucuong/UniRep
UniRep model, usage, and examples.
totucuong/UniRep-analysis
Analysis and figure code from Alley et al. 2019.