Pinned Repositories
tp81's Repositories
tp81/MethodsJ
Helps to write the material and methods section of a scientific article, by automatically generating a description of the imaging parameters.
tp81/abcd-dicom2bids
For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.
tp81/analysis-workflow-20190502
Analysis workflow May 2nd 2019
tp81/cellfinder-brainreg-docker
tp81/CellProfiler
An open-source application for biological image analysis
tp81/cellprofiler-docker
Dockerized CellProfiler
tp81/clij2-stardist-plugin
Run StarDist as a CLIJ2 function
tp81/clijx-assistant-stardist
tp81/cytopacq
Dockerized version of Cytopacq
tp81/datalad-first-test
some default
tp81/ep-analysis-matlab
Electro-physiology analysis software written in MATLAB
tp81/gpt4all-docker
tp81/HOLLy
HOLLy - A neural network project to determine 3D structure from 2D SMLM images.
tp81/ImarisWriter
tp81/lemos-qupath-2021
tp81/midb-open-data-docs
Documentation for the Masonic Institute for the Developing Brain (MIDB) Open Data Initiative
tp81/msi-fatchecker-round2
some default
tp81/neisch-dynein-2021
Code associated with manuscript by Neisch et al.
tp81/nikon-biostation-utils
Stitching for the Nikon Biostation.
tp81/ostrander-2020
Scripts related to the manuscript
tp81/qupath
QuPath - Open Source Digital Pathology
tp81/radial_reconstruction_plugin
Reconstruct radial light sheet scan into a translational stack
tp81/rsg4-utils
tp81/SMLMComputational
Data belonging to computational SMLM manuscript
tp81/stardist-imagej
StarDist plugin for ImageJ
tp81/tutorials
ImageJ programming examples
tp81/umii-fatchecker-dataset
some default
tp81/vaa3d-build
Attempt at a reproducible Vaa3D build
tp81/viv
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
tp81/wbipy