This Jupyter notebook is a tutorial for how to calculate Basis Profile Curve for intracranial EEG data during single pulse stimulation as described in:
Miller KJ, Müller K-R, Hermes D (2021) Basis profile curve identification to understand electrical stimulation effects in human brain networks. PLoS Comput Biol 17(9): e1008710. https://doi.org/10.1371/journal.pcbi.1008710
Please cite this work when using the code.
This Jupyter notebook is a translation of the Matlab code that was developed by Kai Miller in the paper. The Jupyter notebook was written by Tal Pal Attia, Harvey Huang and Dora Hermes, 2021.
There are two steps to prepare for the tutorial:
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Download this example dataset from OpenNeuro: https://openneuro.org/datasets/ds003708
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Set up the environment and add the required python packages by opening the jupiter notebook (bpc_interactive.ipynb) and completing Section 1, Getting started with the Python environment and packages
This project was funded by the National Institute Of Mental Health of the National Institutes of Health under Award Number R01MH122258.