tpecot

Pinned Repositories

3DVisualizationAndProcessingWithNapari
10
Annotater
ImageJ plugin for annotating/correcting nuclei segmentation and identifying nuclei associated with markers
Language:Java4 2 01
BioImageInformaticsWithFiji
7 sessions workshop about bioimage analysis
Language:ImageJ Macro7 3 01
DeepLearningBasedSegmentationForBiologists
3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehensive image analysis pipeline for immune profiling of 2D multiplexed images
Language:Jupyter Notebook11 4 03
DeepLearningForBiologists_FromClassificationToSegmentation
Language:Python8 1 31
EstimationOfProteinConcentrationOverTime
Octave code to estimate the protein concentration evolution over time from 2D still images
Language:MATLAB1 2 01
MuViSS
Muscle, Visceral and Subcutaneous Segmentation from CT scans
Language:ImageJ Macro3 1 00
NucleiSegmentationAndMarkerIDentification
3 different deep learning approaches to segment nuclei and identify associated markers
Language:Jupyter Notebook7 2 12
QuantEvForTrackMate
QuantEv analysis module for TrackMate
Language:Java1 2 02
WholeSlideImageAnalysisWithQuPath
Language:Groovy21 1 25

tpecot's Repositories

tpecot/WholeSlideImageAnalysisWithQuPath
Language:Groovy21 1 25
tpecot/DeepLearningBasedSegmentationForBiologists
3-day workshop to teach biologists how to train and process deep convolutional neural networks for image segmentation through a comprehensive image analysis pipeline for immune profiling of 2D multiplexed images
Language:Jupyter Notebook11 4 03
tpecot/DeepLearningForBiologists_FromClassificationToSegmentation
Language:Python8 1 31
tpecot/BioImageInformaticsWithFiji
7 sessions workshop about bioimage analysis
Language:ImageJ Macro7 3 01
tpecot/NucleiSegmentationAndMarkerIDentification
3 different deep learning approaches to segment nuclei and identify associated markers
Language:Jupyter Notebook7 2 12
tpecot/Annotater
ImageJ plugin for annotating/correcting nuclei segmentation and identifying nuclei associated with markers
Language:Java4 2 01
tpecot/MuViSS
Muscle, Visceral and Subcutaneous Segmentation from CT scans
Language:ImageJ Macro3 1 00
tpecot/EstimationOfProteinConcentrationOverTime
Octave code to estimate the protein concentration evolution over time from 2D still images
Language:MATLAB1 2 01
tpecot/QuantEvForTrackMate
QuantEv analysis module for TrackMate
Language:Java1 2 02
tpecot/NucleiSimulationWithConditionalGAN
Conditional Generative Adversarial Network (pix2pix) to realistically simulate images showing nuclei
Language:Jupyter Notebook0 2 01