Pinned Repositories
DendriteDynamicsTracker
A Fiji plugin to track the dynamics of dendrites in 2D time-lapse movies.
MaMuT
The fiji plugin for Massive Annotation
TrackMate
TrackMate is your buddy for your everyday tracking.
TrackMate-Cellpose
Tentative Cellpose integration in TrackMate.
TrackMate-CSVImporter
An importer for CSV files in TrackMate.
TrackMate-CTCRunner
Batch measurements of the Cell-Tracking-Challenge metrics using TrackMate.
TrackMate-examples
A simple repository that shows how to extend TrackMate with your own modules.
TrackMate-MorphoLibJ
TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.
TrackMate-Oneat
TrackMate extension for oneat for verifying lineage trees
TrackMate-StarDist
StarDist detection as TrackMate detectors.
TrackMate's Repositories
trackmate-sc/TrackMate
TrackMate is your buddy for your everyday tracking.
trackmate-sc/TrackMate-StarDist
StarDist detection as TrackMate detectors.
trackmate-sc/MaMuT
The fiji plugin for Massive Annotation
trackmate-sc/TrackMate-Cellpose
Tentative Cellpose integration in TrackMate.
trackmate-sc/TrackMate-MorphoLibJ
TrackMate detector based on the watershed segmentation tool in the MorphoLibJ plugin.
trackmate-sc/TrackMate-Oneat
TrackMate extension for oneat for verifying lineage trees
trackmate-sc/DendriteDynamicsTracker
A Fiji plugin to track the dynamics of dendrites in 2D time-lapse movies.
trackmate-sc/TrackMate-CSVImporter
An importer for CSV files in TrackMate.
trackmate-sc/TrackMate-CTCRunner
Batch measurements of the Cell-Tracking-Challenge metrics using TrackMate.
trackmate-sc/TrackMate-examples
A simple repository that shows how to extend TrackMate with your own modules.
trackmate-sc/TrackMate-Ilastik
Using Ilastik pixel classifiers as detector for TrackMate.
trackmate-sc/TrackMate-Skeleton
TrackMate module for skeletonization of tissue end points and tracking
trackmate-sc/TrackMate-Trackastra
Trackastra integration as a tracker module in TrackMate.
trackmate-sc/TrackMate-Weka
Using a Weka classifier as detector for TrackMate.
trackmate-sc/.github
TrackMate organization profile
trackmate-sc/MaMuT-tutorials
Repository for the source files used to generate the MaMuT tutorials, following Tobias Pietzsch architecture.
trackmate-sc/trackmate-core
Core library for TrackMate applications. Ship basic data structures and algorithms.
trackmate-sc/TrackMate-ExTrack
Perform ExTrack computation in TrackMate.
trackmate-sc/TrackMate-Kymograph
Generate kymographs from lines between two tracks in TrackMate.
trackmate-sc/TrackMate-Pairing
A Fiji plugin to pair two TrackMate files and extract statistics from pairs.