Pinned Repositories
brain-blocks
3D .STL models for brain blocks ready for 3D printing
cfosAnalysisPipeline
how to use wholebrain to analysis cfos data
headfixedArduino
a set of arduino files to control input output on a headfixed styrofoam setup
minimal-Qt-R-IDE
minimalistic IDE for scripting in R from Qt app using RInside
MMCore_OpenCV_Imgui
A minimal reproducible example showing how to get MMCore image buffer into OpenCV and display the result through Imgui
OpenBrainMap
OpenBrainMap is an open-source brain atlas based on Non-Uniformed B-splines (NURBS)
spatial_transcriptomics_heart
high level analysis of spatial transcriptomics 3D data
wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images
wholebrain-examples
example R project files for WholeBrain
tractatus's Repositories
tractatus/wholebrain
R package for segmentation, registration and generating web-based brain atlases from microscope images
tractatus/spatial_transcriptomics_heart
high level analysis of spatial transcriptomics 3D data
tractatus/brain-blocks
3D .STL models for brain blocks ready for 3D printing
tractatus/wholebrain-examples
example R project files for WholeBrain
tractatus/cfosAnalysisPipeline
how to use wholebrain to analysis cfos data
tractatus/microLRM
software designed to enable your microscope to create sequencing runs, monitor run status, analyze sequencing data, and view results.
tractatus/MMCore_OpenCV_Imgui
A minimal reproducible example showing how to get MMCore image buffer into OpenCV and display the result through Imgui
tractatus/moltools-calendar
tractatus/acm
Quarto template for the Association of Computing Machinery
tractatus/Anubis
Proposal submission and review handling system.
tractatus/bacteria_segmentation
pretrained and instructions for annotating and training segmentation of bacterial fluorescent images
tractatus/cpd
C++ implementation of the Coherent Point Drift point set registration algorithm.
tractatus/cpp-project
Boiler plate template for C++ projects, with CMake, Doctest, Travis CI, Appveyor, Github Actions and coverage reports.
tractatus/fisseq
a R package for handling image processing related to FISSEQ data
tractatus/instaviewer
tractatus/leti
tractatus/manuscript
a manuscript template
tractatus/marinerscap
python tool to design probes for various organisms
tractatus/mmCoreAndDevices
Micro-Manager's device control layer, written in C++
tractatus/PixelAnnotationTool
Annotate quickly images.
tractatus/PointFlow
PointFlow : 3D Point Cloud Generation with Continuous Normalizing Flows
tractatus/pugz
Truly parallel gzip decompression
tractatus/pytorch-cpp
Pytorch C++ Library
tractatus/RCPatlas
tractatus/SI_ChAT_rat
tractatus/SMART
Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
tractatus/test
tractatus/tractatus.github.io
tractatus/velocyto.R
tractatus/web_api_with_cpp
Front-end With React, Back-end With C++.