traitecoevo/traits.build

Issues

• [traits.build workflow] Outputting a traits.build wide table

  #166 opened 5 months ago by ehwenk
  0

• [traits.build workflow] Add field for specimen identifiers

  #167 opened 5 months ago by ehwenk
  4

• [traits.build adding studies functions] Merge some current {austraits} functions into {traits.build}

  #168 opened 5 months ago by ehwenk
  2

• [traits.build workflow] Require new value_type, "standard_error"

  #171 opened 4 months ago by ehwenk
  0

• Adding university identifiers to traits.build - discussion

  #169 opened 5 months ago by ehwenk
  0

• Additions and modifications to traits.build functions to add & review datasets

  #164 opened 5 months ago by ehwenk
  0

• Additions and modifications to traits.build workflow

  #165 opened 5 months ago by ehwenk
  0

• Additions and modifications to traits.build tests

  #163 opened 5 months ago by ehwenk
  0

• [traits.build tests] Duplicated tests between `dataset_test` and `tests`

  #131 opened a year ago by ehwenk
  0

• [traits.build workflow] Precedence of column-level metadata over trait-level metadata over location-level metadata not working

  #60 opened a year ago by yangsophieee
  9

• [traits.build testing] Test for checking units in metadata are correct/in the unit_conversions - units must be in units conversion file to pass the test

  #146 opened a year ago by dcol2804
  0

• [traits.build testing] Increase efficiency and accessibility of `dataset_test`

  #129 opened a year ago by yangsophieee
  0

• [traits.build adding studies functions] Better options for checking data quality

  #137 opened a year ago by ehwenk
  1

• Test breaking if no contexts in database

  #150 opened 5 months ago by ehwenk
  1

• [traits.build adding studies functions] Generalising dataset reports

  #140 opened a year ago by yangsophieee
  0

• Omit trait table columns that are all NA's?

  #107 opened 5 months ago by ehwenk
  0

• [traits.build workflow] Add "time" category of traits, in addition to "categorical" and "numeric"?

  #87 opened a year ago by yangsophieee
  1

• Create a hex sticker

  #105 opened 5 months ago by dfalster
  1

• Enable modification of life_stage variable for other organisms

  #155 opened 6 months ago by habacucfm
  0

• Add test for checking units in metadata are correct/in the `unit_conversions` file

  #141 opened a year ago by yangsophieee
  1

• False positivies with `dataset_test`

  #133 opened a year ago by ehwenk
  6

• Should we include tests of build dataset in `dataset_test` ?

  #71 opened a year ago by ehwenk
  3

• embed traits.build version in database `config/metadata.yml` file

  #124 opened a year ago by ehwenk
  3

• Add `dataset_test` for checking duplicate rows in contexts table

  #118 opened a year ago by yangsophieee
  0

• error in `plot_trait_distribution_beeswarm` - reports won't build

  #128 opened a year ago by ehwenk
  0

• `exclude_observations` does not allow trait values to be excluded

  #112 opened a year ago by yangsophieee
  1

• Make `austraits` package functions part of workflow or testing

  #93 opened a year ago by yangsophieee
  3

• Checking changes/`git diff` in test dataset expected outputs is currently tedious and prone to error

  #110 opened a year ago by yangsophieee
  2

• Duplicate categorical values within a combination of trait values in a single row

  #120 opened a year ago by yangsophieee
  0

• `dataset_id` field in `taxonomic_updates` table is incorrect

  #117 opened a year ago by ehwenk
  1

• taxon_names excluded in `exclude_obesrvations` appearing in taxonomic_updates and taxa tables

  #115 opened a year ago by ehwenk
  1

• APCalign vs traits.build differences - for discussion

  #98 opened a year ago by ehwenk
  4

• Reports not building

  #101 opened a year ago by ehwenk
  3

• Make a function to help identify duplicates preventing pivoting wider

  #83 opened a year ago by yangsophieee
  0

• Update `remake.yml` to have a more generalised final target name instead of "austraits"

  #66 opened a year ago by yangsophieee
  1

• Add `dataset_test` test for checking context metadata values are in the data

  #63 opened a year ago by yangsophieee
  1

• `exclude_observations` field not working

  #96 opened a year ago by ehwenk
  4

• Genus-level observations not appearing in the `traits` table

  #62 opened a year ago by yangsophieee
  2

• NAs in an `individual_id` column lead to NAs in final `individual_id` column

  #94 opened a year ago by yangsophieee
  0

• Add `collection_date` to variables that make `observation_id`?

  #90 opened a year ago by yangsophieee
  2

• Update schema for reading in metadata from different sections

  #67 opened a year ago by yangsophieee
  3

• location_id should be NA's for all `entity_type: species`

  #72 opened a year ago by ehwenk
  4

• Add test to `dataset_test` ensuring `collection_date` follows `custom_R_code`

  #55 opened a year ago by yangsophieee
  1

• Add a proper "repeat measurements id"

  #68 opened a year ago by ehwenk
  2

• Rename `plot_id`, `temporal_id` and (maybe) `treatment_id`

  #56 opened a year ago by ehwenk
  1

• Add test ensuring a dataset can pivot wider

  #54 opened a year ago by ehwenk
  4

• Warning during unit conversions

  #65 opened a year ago by ehwenk
  18

• Add dataset test to confirm all metadata context property values are in data.csv

  #75 opened a year ago by ehwenk
  2

• Correctly read `entity_type` and `value_type` as a fixed value when a column of the same name exists

  #58 opened a year ago by yangsophieee
  2

• Explore `value_type` errors

  #57 opened a year ago by ehwenk
  2